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Human element [ hs1678 ]


Position: chr10:78,039,254-78,043,785 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C10orf11(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGTATAGACGGGCTAAGGAttaaaaactaataacaaatgcttctttttttttttttttt
tttttttgagatggagtttcgctcttgttgcccaggctggagtgcaatggcacgatcttg
gctcactgcaaccgctgcctcccgggttcaagcgattctcctgcctcagcctcctgagta
gctgggattacaggtgcccaccaccatacccagctaattttttgtatttttagtagagac
agggtttcaccatgttggccagtctggtcttgaactcctgatctcagaataaatgcttct
tataggcattgttttaaaatgttacatgtgttgtctaatgtaatactcatgacactatga
ggtagtcccattttatagacaaggagactgaggcactgagaagtgaagtaaccagcctaa
attcccataactcataaagggttgagctaagatttgaatccaatcaacctctgcatttaa
tgcctatttgtgagtgagtgtgtgtggcagaaaggatccagagtagatgactggtgaaat
tagatgtttaggcaatgtcttcacatttaagatcattgtcaaggagaaaattttgaaatg
tattttgtcatcagaaataatccagggacacgtagagccaaggcctgagccagagaagag
gtatttatactttgattcaaggaacatgaaattaaccaggaaaaactgaaaagcaattta
atccttagactttataggagtaaccttgttgggtttggtggatgtgatggaaagaatgaa
gggcaggtattgagcacagctaggtatgattctctttttgccatcttccattttagtgac
cttgagcaagctggttcagcttggggtaggggattttgtatccacagtagcagagtgaag
aattatatggaatcacttttttgcacccttcagattctaaaacacaaacgtttttgcatt
gtctaccctgatactgaaaattattgatacccttgatttaacatttatattctatcttat
tttgtattttgcacattgatcattcatttattcagcccctgtttgtttggggtatgcttt
gagctcactgtgtgacttttttccttaattaaaattagtctgggagagaatgtatttgcc
tcctggaattctcagaattctagcaaggtgccctaaacatcataagcacacatcagcact
gttcatattgattatcatggtacagtagtgtatcaaatgccacctgaagttgagtgctgc
aaatatgagaaaacctccgtaaaatcagccctcaataacttttctagggaatgtgcctta
aaaaaaaaggtactggactgtgtgctgagaaaactgtaaatatgagtaaaatgatccctg
ccttcaggaagtttaccaacaagggcacaagcaaccattgtagaattgcttgtggcctta
ttgatatacaggctaaggattaaaaaattataatcccagggatgaaaagctttagcagtt
atttagtccaactctccacacacattgagtccccgttacaacagcccaccaaatggttgt
ctggcatcttcttgaacacttcagtggctgtgaactcaaactgctcattctgctcgtggt
agaatgacaggctctcaatttttgtgtagaaggaagtgtcttgctgaagagcaaaggtct
tttctaggctgaggaaaagccaaggaggtcatcttggagataaaaatctggaaagtggaa
gtatatgggaacagacctcaaaggtcctttgttggagcaaagttacagaagtacaaaagc
caaggcacgtggtaggaacattaagtagtctagcttggtcatttggcagtgacaggttga
gaatagggaacagtgaaattgttaaagatagactgggactataatttggaggaccttgag
tgccctctacttctggggtacataacggccctattgaaaaccctaattctatatccaata
ggtggctcattgagtaaatcactgttagcagtcagatctgatgtgttccccaaatccaca
tcctttatactcacctggacaactaccattcccccaacccccccatcatccatgaatttt
cttcagttcaaagagacatggttaaagcaggaattatgaaaagggccctctgccggcctt
atttccatgtagatctattttatatgcataataaccctaaggggaagctgtgtcaatctg
ccttacctgacagacccctaaatcctcccaatgctgcctccactattggacatgtgccaa
gtggcttgcaacctcaaagagagaaagcatcctgattttttgtgtgtaggaaggtggggg
gcagtgataaacaggtcttggcctgttattgtcttcctgcatgataatgaacccatcact
agcacaggaatttaatgcaatgatttttccaagaaccatccagccccattgtagccctgc
ctgaaaatgtaaatacaccctttctggggacagatttgcattttttggtgaaagaaatgc
atatatatggcaaagatgcctctgtaattatagaaagtttatttctgtccccagatgtca
gcaatcaaattccacataaatatattttgtgtaaatctgtcggcagctggtctccattca
ggtttctggagatattagcctgtctttgagtttatgacaaagttaaaaattattcattaa
actgacctgcagtatattcagtaactggaaaattgccttgcagttctatttggtttgtag
atgtgatcacaagtaaatttttaacttaattaattggccgtttctgttgacaagaaattt
atgtggtaataatttgctcgaaatagatgccgactgtaggaaatgagatatccatcatag
gcttgtgttccaccagctgcacagtggctattatgaaagtatttcagcctgcgtcgaccc
cagtgtttgtgcagtcaagattatatatacccacgatccatagcctgccagagaggcgct
ggtggaggtctatgataacaaagactttgtgatttatggcttgctgtgaaagcagagctt
gatgagattaaacaatttcatagcacaagtgtttctcaagacctgatttgtagttgcaag
ctgatggtaaatcacatttatatatctgcaagcgtgctcagcagaggactgcaattacag
tttaagacagctactttttatttaatttttatcctggttttgtctcttttatatcccctt
cgtctgcaaaccattcaccttcacaagtcctttcctggttagaaggccaaagattgaagt
caatgatgttcttcgtgtctttgtgccagcttcagagggaggtccggcagatttcagagc
cgtgcagactggttcaaactggctctgactggtgtgagctctttgttcaatttcatgtcc
aaacagaagtctgtttgctattttcccttggtgtgttgctgatacttaaacttcttggta
tacagagggagaaagaggggtcttcatcatcctgggatatagggaactgtggagcacata
atggaaaagggagatgaggactaaattcactttagaacctcaacttcaaggttgcagcat
atcttagggtgtacagttagctcccctttaatgggaaatgtgaaattgtgtttccccaca
gatctgggaggaataaactctgcaatgagtttatttaaccagtttattgattatctactg
tggccacatgtcttcactgagtactagtacagcagtatttgccctcaggcagtttgtaat
ctacatatggtgctaaaacataaaaataagattggaagcagcaagatcagtgatagcctt
acacgagtggtgcacctgttgttggaggtcagaaggaaagggagatagagttcttcccac
tggggaagcatgaaggagcatgaatgagacaagtgcttgagggacagatcggatttcaag
taaggggaagaggaagttctggaaatttcagtgatctgtactgaaggaggcctctaaaat
actcaggtgtgagttcaagtccaggctgggtggccagtgattgaataattataataataa
cataataataacatcgattgaatgcttactatatacaacaaagagtgctatataggtatt
atctcattaatcctcataacaaccccagaaagggagtattattgtgatctccatttgggg
aacaggaaattgaggttcagagaggttaagtaatttgatcatgttcatccaggtgtttgg
ttgagctggttcaaccaataccctggtgtatttcaccccacagcctgtgttctttgccac
tgtgtttcactgcttttctttttctttttaaatggagaggaggtctcactctattgccca
ggctgatcttgaactccttggttcaagtgatctgccagcctcagcctcccaaacagttgg
gactacaggcatgcaccaccaccacacctttcttgttttactgctgttagacagagaata
tgaatgtaaTTAGGGAGGCAATTCCACTGtTc
Primer
(+)TGGTATAGACGGGCTAAGGA
(+)CACCAGTGGAATTGCCTCCCTAA


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