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Human element [ hs1647 ]


Position: chr14:32,940,050-32,944,094 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AKAP6(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CtaCAAGAGCAGTAACAGCCATTTGatttttggttaatgttgaattagttcataagttta
acaaatgaatgtcattcacaaatttagttaattttcctaagacctttaatccatctaata
atctcaaatactttagatacatgaggatagacttagaaacctaactaggccaaatctttc
agtgaacttaggccagttttgaaaatgtaataaaccaaatttataactatgataaactag
gttctttcatattacaaaattaatcaaattcttacctttattaaaatcatggccgatatc
cattcaacatttcaaattaaaacttcaaggcagttttgtattttggattctttaaaaacg
tttcaataattttaaataataaacaccaagattgtctccataatcataaaatgtactgcc
aaagttagcactaagtaccatgggttaggcttatgtcattatctctgtatttctacattt
tcctagtgtttcatagtcacacagctaaagatagtagaagtcatctgatccatgaccagt
tctgtaatgcgtttatggacggtggtagtaataagaaattgtggaccaaaagcaagatca
tagtgctacttcctaaactgtgaattagcaggctgaaccttttaatagtttaagtctttc
ttgtcagtgggggaatccaagtccatggcgagagctgagacttagtttcataggccattg
tcttttctcctaagtgtattatacatttactcaattttcattgtaaaccctttcaacatt
ctctcacccaatttgggtaggtggaatcctgtaccccccaccagggctatagctaatatc
ttcattgcacagttattgttcattgagacatgtacctccatccatggtataaactgtttt
tattatctgtctcacctccattttaacagtaattctgttgacattgcttctagactggag
tttggctaataagacactggacactgtgttatctgtgctaaggaagcacagataacgcag
cgtgttaagcattctgggtcaggatttttgtgctggcacaattgtgagtaaaccaagaaa
aatagtccctatgagatttctttcagacttcagcacacagaaacctagtggattgttcct
taagataaaagagaggtttgagaatttactttttgtcatagtttgggttcccaggaatcg
gattctgaggctctgagatctacatgctggaggtttattggggtgagttcttgggaaaag
cacctctgagaggtgagggaagtaaatcaaccagagagaggagttgaactgcagctgtga
cagagatggcagtattcctacccagaactctaaagtggctccccttttcccccaggcttt
atacctcctcccatttagcagacatgggatgtggaaagctcccagggaagggcatgacct
tgggtgaggcagctgagggcaagtcccagggagggtctcagctgagagcaataagcagtc
aacactgcttagcaggtggggtaaataagtgtcttgatcataaggtggggtaggaggagg
gcaagtataaatgctgtccaccgcattcaatagaagtgttttctctattattactaaaga
atggcttgacccagaaaagatcatggtctttagccacagaacttaattctaggagaggcg
atattacagcagactgatccctgtaatgcaaatggcaatgcccctctttgctgagaggca
ttgtggagaatgcatgaaaacatggcagtgatgttggcagggagatggcaacgaggttct
ctgcaccaactgtctcctgcagctgggaaaagacacacagcctggctgccaactgttggg
ctcattgtgctctggctgaatttagttccctcttatgtcagcttgcaattctatgttgaa
gaaaatcggtctggtctgccaccatcaccatctcttagcaactaagagagattgaaacaa
cagctgggtaatttgatattgggaacttaaaggtcgtgaaaatagaatataatggctgtt
tgtattaaaggaaaaaaaaagagaaaatgatgtaatcctaatgcttagaaatgtttggaa
tgccacatgggttacaaagagtgaaaatctagtttaaactggttggattctttctctctc
agaatgattaaagttgagcccagaagctcacccaaacacacatatttgcctaaatataaa
tccctgtggaatgttggagctataatgtgaaaaacagtttctgtgtttttgtattttctc
taagactgacctacagctttcttatcacaagttttgaagcaatacttataacatagatga
taatttagagttattttttactttgctttttgtgggcaatggggatggggactgcagtga
agatgggagagaatgaggtgtggccctcagacatagtgctgtgcaggaagcctactactt
cagaggctgcccacagcctcacatacaacaggtaataatagaattacatgtttgaaaact
agaaaatgagaagtagaagccagatgaaattgttaaaacaagtttttcttttttccctag
ggccagtgaggagaccatctgtttttcaaattagaaaagccagaaaatataatgtttgct
ctcagaatgagtcaaatgtcatactctaatgaaaattccaaagcagaaagagagaaagga
agaagagcttgaaatgccaaattagtggggtgaggtgcttgctgcttgcattcctgcaga
tccaagcattttgcaactctagtaaacctgccaggacaaggttcatttgaaggggtgtgg
attaccgggaggtgcggggggactgacattctagtgctttagatggtaggtaactgcctg
gtcttgtttctcagaataacttgttcatccaccacatatgtggctttcatcccagcacat
tgggcaggacaccactgttttcttcgtttggttaatagttacacttccttgacacctcat
acagctgggtcatggatctgctgctgttctcaatgtgagcatcactgtctttttttcttt
ttctttttctttttttgggacaggatctctgtcacccaggctggagtgcggtggcacgat
ctcagctcactgcagcctccacctcctgggttcaagcgattctcctgcctcagcctctca
agtagctgggattacaggcatgcaccaccgtgcctggctaatttttgtatttttggtaga
aacggggtttcactatgttggccaggctggtctcaaactcctgatctcaggtgatccacc
cgcctcggcctcccaaagtgctgggattacaggtgtgagccacggtgcccagcccactgt
cttttttcatcaatgctaagagaatttaattctttccacatgaagcgattctacttcctc
aacacgtgtttcgttttgtgacacaacaacttggaggaggtgaaattcattaacaaggaa
taaatatcttctctttatggagccacttccttaacccctcaaatcttcctagaccacttc
catccaacgtagaataagtgaaccatatgaaattgctgtttttgtgggtcaaaggcaatt
gaatggtagtctcacatggttcaacatctgtatacaagcaagttctctgatgaaaaagct
gagtgactgcgagtaccattcttagaattctttaggagagaagaaagatttcaaggtaaa
caatctgacaaacttatttgtaatcaaactaaattccaggtggggctggcttatagttca
cacacattaaagaaatagggattgaatcttgcaggaaactagcacttttccccaaggggg
atgaggatttaagtttccttcatggaatatgtttccagttcatttggtcctgcatttatt
ttagaaattgtttgatatttgcacttcactcattttccaaaatttgttctgattccagat
ttctctgttaaatttctataaatttgtttatttgctatttgctttggagaataggaatta
tatgaATTTCTTGGCAAAACGGATG
Primer
(+)CACCAAGAGCAGTAACAGCCATTTG
(+)CATCCGTTTTGCCAAGAAAT


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