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Human element [ hs1617 ]


Position: chr1:210,433,698-210,437,258 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SERTAD4 - HHAT

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CATTCTGTGCCTGCTGTGATctggtgccagcaaaaagggaggaccccttcctgccatgtc
cctgtccctaggtaactctgttcagagacaaagattagctcagattggtgcgactagcac
ccctagcagcaacggaaatgaaaaaataagggcagttttcttttgttttagttttcattg
gaaaggtaggatgcatccttgaaagactatcaaaatatcaagagggtgttgaaaacattt
gggcagccatgaatacgtctatgatagtgccccttgagatgctggggacatagtcccagg
agacttgctataacaactgtattttgaggtctctcattttaacttaatttttttttgaga
cagtgtctcactctgtcacccaggctggagtgcagtggtgtgatcatggctcactgcagc
ctggaccttctaggctcaagcaatcctcccacctcagcctcccaagtagctgggactgca
ggcatatgccacgacacccggctaattttaaaaatttttctgtagagatggggtttcacc
atgttacccaggctggtttcaaactcccagtcttaagggatcctcctgcctcagccccct
aaagtgctgggattacaggccccacacctggcctaatttcaacacattttttaaaaattc
attgacttctgtattatatgtgtatatatctcttatcatctatctagaaatatatatata
catacacacatatactatttataagcacacattgtatacatacatgttttatttaccata
ataatcacatttctctaaaaatcaagtagaattggggtgttgaggagaatatttgaagct
aatccttcagtttctcataaccctcagctacacacacacacacacacacaggcccttaaa
gatcttagaaggaagggagggtaaatgtcctggtttatctggaacaggcctggtttatgc
ctatgggcccagcataatgattaataacacacctactgtctccaaagtcctcatttaaat
gataaattatatagtcgtcttaatcttgggggacacctgacagtccctggcttctgggat
gtgttgacagaaacgaaattgcaacctgacccagccagcccttggggaaaactaggtggt
cagctgatttgtctttattctcctattttgagaggtcggacctccaggccctacctcacc
acccccagccagttgaactaagacctctggggacatgggctcctaagtcctgtcccctaa
gaatcaagaatgcataatcacagatgctcacacacaggctacggtcctagccaagccacg
gccatcttattgctcaaaactttcctcctctaggaaccatccctaacactgatccactgt
aaatataagtcctttagtatatgatgtccccacattgcataaaactcactgaacctgctt
acatgccaattctgtatgagtttgattatttcgtttactacagtcctgcctttcccacca
gactagggatcccagggttagggggctatctactaggtatccccaagtgcaggattgagt
tcttcccccatcaaactaggggtctctaatggcaggaaccagtctcccctatcagatgaa
gctcccaagcacaggagtcctgtaacctggaagacaatcatgtcatcttctctttacttc
tgcctttgccttcagtgcccaacttaggtccaagggaaagtgtaggtatggatcttgttc
tcctaactaccccgcacctgggctgggtgaaggggtgagatttgttcctgtgactccctt
tcaaagcagttctgatttttccagtctgcctgggcctccaggctgcagagtggactgact
cgtgcttaatgaagcacattctccatctgtggtctgcccctcctggcagctccagctgcc
tggggcctggctttgggggaagcagtaaagaagttccttcatctcaggctgccccccact
acagacacaccaagggatccactcccccaggccagccccaccccacccatgttaggctaa
tgagacccagaccccacaccagagctgtcctgattgggttgacctatttaattaaaacag
cagcttccaaaaacggaggttctgctccaaggctctgcccctggcctcaaagacagactc
tggctgtctctggccagcttggactttggcactccttctcagaccccgactttcttctct
ccctccctccttccttctcctcatttttccaacatctgtgtccagaaaggaagaaaaacc
gtgtttggactggcctccttccatcagtcatttttttccactttcaaacatcttgtctaa
agcagagtcagttacataaacattccacctctttccataaattggccgcagttactgaac
aatagcgttactgtgcaggggaagagggagctcaaggccacaccccacaagtgctggtcc
cccagccaaatagaaccagagactcattctttgaaagaaccaaagaggaaatccagaatc
ttcgggcgagaccttttctgctgtgcttggagtggttcctttaccaaagcccctctctgc
tctgccctcccggcagccatcttccatctcttaacttcaagctgtttgaacggatgccca
atttctgctttttccttaactgcctgacagtgtgtgtcactgtgtgtccctgtcctgagg
gcagagtgtgtggatgatggagttggtggtggtggtgatgtgtgcctgtgtgtgtgtgcg
tgtgtgtcttttggcaagatttttggaggcacgccctcaagattttgttgccttttctta
aatagaagcagttagacctcactaattcagaccagttggagaaaagtccacaggggaaaa
aaagtctgacttaacagaacacagttcttcttaggccctctcccttctcccaagtgcatc
cagttactggaactggactaaccacattggcagatacagttttgccagacttgctccgtg
aataggtaaagaccactttttccattatcttgagtacctaattaaatgtgtgggccactc
aaggtgtgaaaatgcgtttttttttcttttcatagtaggtcagatatcttcaacacttat
atagtacttgtcattggcttagtgaactgtcttcttagccagactgtatgctctttaagg
acaagttctatatctgaatccattcactatccagtgcctattgtagctccaagcacatag
taagtgtgcaaaataaatgttgaataatggatggatggatggataaatggatggatagat
gaaattagtgaagtgggaatagaggggtggagaaagagccttggcaggggaagtttgaag
gaagcttctattgacctccttctgatgaggagcagaagtagcagagagcgatgttagagc
aagagcaagtaacagacagcattgccatcagctctcacagcaagtggcaggagaaggggg
aggcagagatggttggagctggggctggggaagtgagtggtaaagcaggagtaggaaggc
tATGATTGAATGGGGTTGGTG
Primer
(+)CATTCTGTGCCTGCTGTGAT
(+)CACCAACCCCATTCAATCAT


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