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Mouse element [ mm1609 ]


Position: chr12:27,744,939-27,747,964 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cmpk2 - Gm20187

Timepoints:
e12.5

Expression Pattern
midbrain (mesencephalon) (3 out of 5 embryos) 

Embryo 1


Embryo 2


Embryo 3

Fasta sequence
CCTCTAGAGGGAGAGCTGGTactgcaggtgtttctcagttaagttccagacgtgaccttc
aaacaccccctcaatgaaacatctcttcttcctttattaaatgcactaattaaattatat
actcctcatttaaaatgtgctttctttagtactcaaaatctccacatgtcacgtttctca
ggggaggaaatgctaggtggcatttgctacaatgagcccttatgaggaatacacgtcccc
agcctctgcattggaagggaatgctggagcaagctcgtctggcagaccccataccccagc
acaccaggaaaatgctttctcttttttgacagtttcacaggcgcaaggaaaccttggtct
cttaggcctactggattcaggctgtgcgtaaattggattttctgtgtggtattattcaga
aaaaaaaaaaacaaacaaaaaactaaaacacaaaagctagtcaacctacttgcagaaaaa
aattcagaacacccgggctcttcccaacctgcagatcctttccctgtctgtgtgtgtagt
tttactgtccggcatgacatctaaacagaatctctctcagaaatcacagagcagacttct
ctggaagccaagaggggcccggagggaggggcaatatggaaaatagagtcccgtgtttgc
tttcttttctttgccttccccggacccgatccccacttttttaaagaaatccacctgttc
tgcttcagtttcaaatcattttaagtccaagagggcttctcttccttgcacaccctggat
atttcaaagcgagcccatcttcactgcaggagagagtttattcaggtgttatgaatcaga
caagggctcagggatgcaaactggggctgagacagggcccccgcgagtctggtcccctcc
ccgataaaagaaacataacaaacccctagaaaacagtcctccagtaatctccctgcctgc
gccaggaataggggtgacggaaaactgccctctcattatagtcctggtctcaaggttaga
attagacccttagggtaaggagctgtcaattagagataactccagcctgctgtctgcagc
cgggcttatctcctagcaactctcctcattcaggccacagcccttggctctgcctgcagc
tcaagagccatcttgaagacaacaaaataacctcctcattttgagcagatgcataaagaa
ttcttctctgggtccttgatggagtctcgtccttgatgaagcccgggtgacattcgacta
gcaacggggctggggagatctgcaaagaattatgattgggctcccgtccagctgcagatg
tttccatgggaagagcacatggaagggtctggccaagcaatcagagcatctaaattcaat
ctgagactgggtgcctccttcttccagatcagagcctggcatgtttatgcaggagccagc
atagtctttctcctgcctactttctgcttaggaagaatttgcccgcagttgggagtgcag
tggctctggttgccacgggaactcggcctctcctttattcaccatggcagggcatataga
gagagccaacaagcataaatcgtattaagcgatgcacggggttatccaccatggatgtag
gcaacatcacagaatttactactggaccctatacttggtgtgcagagaaaatgcaggcta
caaattccttggagctgtctactcattagagctaggaatcgtgctgttgacttttctaat
cgcaagcagagttaagggtggcaaaatgctggaagactcttaggggctgggggagaggca
agcctttgattttttcactggagtggaaaatgataacaaagggatatctaagaaatgttg
taaaaaaaaaaaaaaagatgagaaatacccagtgtgctgtgggtgtaaattagatagatg
gtgttcttagaattgaagatttgacttaacaaaactctcctggaggacaacatcaaggag
gtacacagacaaggagcaggggccatttttttaccgaagcggttctccttttgcccctcc
cccactgctccccactcggtgttacgcgcggctctgcagcactggctctcctatccagcc
ttccaatctcccctcctcttcatcaatggagagactatctgttttgttcggctgctttta
tgtttgtgaagaacccagcacaattttttatcaagctagttgggtcagaggaaagagctg
tgtacaggggcagaggagacagaaggagaacgccaggcagctgccatgccggctgctagg
cactgtggacacagagcttggtttagctttgccgtggctttcctcctgccctccctcaca
ctcagtgcagggctcattaagctcccctgctaggtttcctattagggcttgtcaatatcc
caagctgcagcatagcttctgaaacaggggagagaaggcttgggcaactttgaataaatc
ttttctgtgcttgtctgagtgggacatacacacaattttgtttcaaaatggagactctag
attttaattttaaaaagcagacggatacatcacaggatattcagcatcttaaaattaaac
gacatgcagcttgcagaaattaatattttcaggttgctgaagaagaaactgggaaactga
gctctgttatgttctgaattgttctcactaagcaaatacaccttaggagctttctttgat
gttattttcttatgcaatccaatcagttgtgaatatgcacagtgccctgcatcttttaaa
ataacatttctaatgggccattctttacagggtagaggctacccctgcacatagagcatg
ctggttggcattacatttgaatatagtaacgaaaaaatgacttataaaaagaagaaatat
ctctagcaatcaaagtttactttattaaacagcagattggcaatgtctccaggattctta
tgtggactgccattgctggttgcctaggagatgagggaacttaactgcttcactgccact
ggactgCATGGATTCTTGCAGCGTGG
Primer
(+)CCTCTAGAGGGAGAGCTGGT
(+)CCACGCTGCAAGAATCCATG


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