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Human element [ hs1609 ]


Position: chr1:60,102,624-60,105,491 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: FGGY(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGACTTCCAAGGACCCCAGTgggaagtagcacagatgccaactactgcaatatccacttt
cttttgaaatcattggttcagaacttttagaaagcagcatcttttaagaggggaaggttg
accagctttcatctttgtgtcatgtggtgtgatttaacccggtgaggtaggtgttattaa
acctattttatgagtgggaaaattggaggtcagaggttaagtcactggcccattttaccg
agctaggagaggtagtatcaagatttgaactgagtagtgctctcatgcccatcatcttct
ctccacctcctcttcacctgaacatgtaaagaatgaaggagttggtttgactccctcatt
ctacacatgaagaaactgagacttaaaaaggagaaaaaaaaccaggcgaggtggctcaca
cctgtaatcctagcactttgggaggccgagatgtgtggatcacctgaggtcaggggtttg
agaccagcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgg
gtggggaggctgaggcaggagaatcgcttgaatctgggaggcggaggttgtagtgagccg
agattgcaccattgcactcccacctgggcaacaagactgaaactccatctcaaaaaaaga
aaaagaaaaaacgtacacaatgtcatctggtgggtttaggttgaaaatcaggtctctaac
tcctgatcctaactgcatttatgacattcagtcactttacttagcaaaatcctatcctga
gtctgggaacttataatttctctccatttatcaactcatcatcattattacaattaggaa
tactgattttaataaattattgacatatgaccagtactgtacagtttacaaaatactgcg
ccttcacatacataatcttctttgatcttcacaataaccctatgaggtaagttggacagg
gattatgatatctgtttttacagatgagaagagggtggttcagaaagtttgaataacttt
ctcatggccatacatctactaagagtaaagccattcctggatccagtcttctgactccaa
acctttctactaggatgtggcacctttcttggtgatagtacagtgtgatttgagagtaca
gtgggctagcttctctgaagcttttaggagcctgcttactttcctggatctggaagtaca
aatggtttctttctatagaatgatttgctccctgaccctatcccccctttaaaaataaaa
ttcacttctcttccagatgccagagtatatatgcatatttgaacagtcacctggatctga
ttaagaaggctcagcctgtgggtttccttactgttgatttacatgtttggccagatttcc
atggcaaccggtctcccttagcagatctgacactaaagggcatggtaagtaacagctagt
ccttgcacatgggtgaaggcaggccaaagggctacaaagtttggaagaagcaaagtgagg
aaaaaggaaaagaaaaaaataaaacaggccaacagccctctggctttgtgcagatgcatt
gctgttgctgctccctgggatgagctgctgaaagttttcattgtttctgagccaaccttg
aaagcgttaaaagcagcatttcctagttcagctactgctgcctctttgtcctgtggagtg
gctaaaagtcatgcctatgtaattttggcatttatatcagtttgtaaagtcaaattttcc
agctgcatctttaggttgcccagtaaatcagtagtaaatattaccacccatggtcttgct
ggccacagccacacatctgcctaggctctgagtcagggctgttcagattctacactaata
tagttaggatttcagattaaactttggtataagtaaatgtaatttataacttatgttgga
aaataaatcctgctcttagtgccctttagggtcacttcctctgtggatattctaggctct
cctagaggggccagatgaacttggtgggagaactctcaaccaccccagttgagatataaa
agtaataacatcttagacaccaggagaatcatgtttgaggtgtgatgaagcaggttaaag
gtagaggaggggccaggtgaggccacaaataagaaaataagccatgaatgcaggaaccag
gaaaatgtcatgaagctgagaaggtgagtgtgaggtacattaaggcagagttcagaatgg
aggctgtaaacaaggcaaggcttatgcaaaggaagccgcgtaacagtggagcaggcctga
tggagtcaagaattcaagactcaaactactacaattttgtggttagttttattgagattg
ttttaaatatttttatgatgccagcaggaagacctgaaatttattttcattacctagttg
acatgatcaacttctattactaaaagggagtcatggtgaaaagaaaagaaaattagacat
gacaaaggttatgttgatctggagtccatgaagcatgcctacacaacaaatcatgagctt
ggtgtccttttttatagaggcagaagaataatgtccagagagggccatgtggcaacagac
cgcaactagaaagtcatactttcagataaccaactctctctgtaaacagggggtagggga
agaacacatttcatatgggtacagaaataagtgtcttaattagagacaaatatctgaagc
caaatagagctagatatttaaaatgttgaagcagttaagaagcttgaccagtgttttaaa
tgaccccaaaacaaagcagtgttgcatagtaaaatggtcattgctctggaggtcatttgt
tgctttagataaaactgacctaggagcCTTCCCTAGCCAATGTCTGTC
Primer
(+)AGACTTCCAAGGACCCCAGT
(+)GACAGACATTGGCTAGGGAAG


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