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Human element [ hs1606 ]


Position: chr9:109,181,334-109,184,572 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TMEM38B - MIR8081

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTACCCCTGCCAAGAACACaccactgtggcacagtgtagaggaaagaacatgggaatcg
ggagacagcagtgctgaaagcctggtggggaacacaggcaggttatggaaactctgcttc
tcagtgtcctcatctgtgaaatgggaattgtttgttacaactgtgtcccaggattgctat
gaacattaaatagcatcatgctttcaaatctcgaaatatttataaaatatgaaacattct
ggtgacacacacgataaagaatggaagaaaatttggaagagaaaagaacagaaagccata
ataaatttgattgcatattactcctaatagtactcttaatgtcataaaaccccattggtt
tcatcttcagtattgtactgtatctactcacactacagtttatagctctggaatggtttg
taacaaagaccttcattcaacaaaatttatcaagcacctactaagtgccagccttgacca
tgcaagtgaacaaaatgacttgccctcgtggtgcttttatggctttaggaaatcccagga
tgtcagcccaagagagttctctgacatgcacctactacagtgaggtcccgggtcttgcat
tcttcatcttccacctaatataattctgggtcccagatccctcaaaaacccaccacttgg
ctttagtccaggacaggaatttggagttttgagctaggctaatgtttgatgctcagaagt
tggacaggaacatgtgctctgtgccagccatgctttttgagaactggtgtctgggtttaa
tttctactgtctgtcagagagaagctttgatcagactctgcattttttcacttcaactaa
gtgactagaggctactacttgcccatttctaccgcctctgtgtgagctctggtttggcag
gaatctcagagatttatttccatgaattccctggaattgccctgcccatcatttctctct
cctttccagtctcagcacagttagtgctggaggttgagtgagggagccagtgtgtgtcca
ggaaggtatgggatgagaaatggggagggagacccacacatattgcagaaggaagtgcag
caggaataagtgactgcagctgggtcttaatggcttttcttctctgccgtcattttcctt
taagcccaaaagaaactctttgtaatacgtgttaaaattatggttcagatttctgatgat
caagttacatagattaaagtaatggataccagactctgcatcaattcaggtataaatatg
gatgaaatgaatgtacattatccactgttataaatctacatgttcaaggaaagacataaa
tctcctgaacctttcctacctcaggctatgaaggtgttgttgttttttttcccagtgttt
tcgatgaaattataatttggagtaatttgctggttttgcagaaacttccagctttttttt
ttttttacaagaaagggtagagtatattatttacaatggtgagtcattaaaatgctccag
gaagtcattgttgcagagggggttggagagggaaggggttatgcggcattccagatgtgc
atgtgtggagagcggtggtgcatttggagaaatttatagcacctggttccattgtaaagg
gtcttggcctgggggcatttctcttctcttcccctcccttcagccctatcaccactgtac
acacaggggctcaaaggtggcagtgcctgatgggcacagggccacaggacgttgtggtct
ggcaggaaagagggacttttcattccgtctaagccacaaagctgatgaaagtgtctgctc
tccttgcagcctggggccccctcacatgagcaagagcaagtctcatagtgaaagagaaaa
aacagagccaagcactctgcagaaagaagtgcatactccagctctgctgtgcaataactg
catgtttgggtacctcttatctctttggttttcaaaatctgtagaatggagataatagta
tgcattccataaggttggtgtgaggaataaaggaaattataggtgtgaagacacctagca
caactcctttaccttcctgctgaaactccccacttgtagggatgaaagactcttggccgc
cattgttccaaattgcatcataaattctcaaccattttctcatcttttatggctcttaaa
tccccttagctaagtctactgctccatctacatggaggttcagctatttctaaagtcctg
agttataaatgaagaactcaccaaggagacccaggctctttccataagattgctccactc
tccctcctctgtggcatccacatcataagctcgcagccaccttgccctcattccagccag
cagaagggaaaaggtgaaaagcagggcatgcccttgccctttaaggactaacctggaaat
gacctgcttcactttctgttactttccactggcctgaatttagtcacagggctataccta
atcatgaagggggttagggaaagtattctttacttgagttagctatggacctagctacat
tcacttaccatggaagaaagggagatggatactgggggacaattagcgttctcttccaga
ggaggtcacaggatttgtgccagaaactcaagtagagccatatgctggaagagagagatt
ttaggctctgtaggggttgagaatggatgactgtaatcccatgaatcatgaaatgtatct
gtttaataatcagattaatcaggatgtagccgtgtggcttgctttgttaatgtgctaatt
ccagggactacagtaactgggcccgtcctattatgggtcaaataaaatttaccttcctgt
gtagccacagacagtcatctcatgcctacccgatgtgctttttacctctgtacccccagt
gcatttcccacagcctgccacacagattttcattcaacagttgttgaatgaatggatgag
ttaatgtgagagtaaataaaaggacaagcaatgactgggcaacaggatgtgggtatgtgg
ggatgtcagtgggtactttcataaatagaaccaaaccatctctactctcctgagcccatc
acctcccttactcttaagaaatgtccttgctttgaatttagacagagaaaataaaaaaac
attttcagtacctacactggcccaaacaaacttattggcatctacattcatcctttctcc
cttcccttctgctaaatcgggtaaagtatttccctgggaaATACTTCCCTCGGGCTCCT
Primer
(+)TTTACCCCTGCCAAGAACAC
(+)AGGAGCCCGAGGGAAGTAT


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