Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm160 ]


Position: chr2:38,390,575-38,392,603 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nek6(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGCAGTTTCTTCTTAGCATGActtttccttactcaagagagtcaagagaaaccaaattg
gctggctatttgtttaagccaaaaaatgttggaagaattttgtttgggaagacgggcttg
ggttttcggtcagaactatgctccctctggaattgcatggttggatgtccaggcatattt
taaaagcttggtgaccacccaagtctttgagccttccacgtggatgctccgaggtcacac
tcttccggaatccctcacacagcgggtctgctcattgcgtcaggagtggcacttccacag
agcagctatgtctgactatgaatagatggtttttttcctctctttcttggacacatgaat
ggcagtctccctcctgcagtccccgaggctgacctgtgtgtaaaactccaatacggacat
cacagtagggtcatccattcctgtttgcatgggcccctctcagcaaggctcaaagagacg
ggtcgattgctgctgtgactcagggggcctcctgaggggctcctgggccctggtctataa
aggctgctaagtgtactgaagaaattggacttcaccaaaaagcagcagtagctgagactg
tctccaaactgcggtggctgctgctgcctaatcggggcctctagtcactgtgcagagtat
tctcttagaacaggaagaatgctagggaccagccagcacccgctacagggtggggctgag
ctgtctggtcaggtcacctgactttgacctaactcaggtagcctgcctctttgcttcaac
tttctccttttgcaaaatggaaataatggcatcgctgtctcacaagatactagagggatt
cagttacttatcattcaagcacatggaactgtgcttggtacagagtggataaataggggt
aaactggggccccaagaaggccagggacccatcgatggtcacgcagccaggtgggggcag
ccagggccgcagcacatgatgtgctgtctcgtggacacgtcccttccttcctgctcagac
tttctcaactgtcttctgcagaggaagtcgcatgaccctcagccacaggaattcttagca
tcagtgtctggagtctccttggctggctgaagctcgctctgcctgctatctgctattcag
ctgctgtttttccatgtctttctcgtaaagctttggagggtctctcctgtctttgcaaat
agaaaaattaaccttttggacaaggagtctgaagacttaatgtgtatccttgctgtgtgt
ctctgaagcagccactgcctgccccgccacccccagcctattgtcttgtctgttgtctga
cctgcccacctgtgattgatgcagaaataggccagccatgtggtgctccccaagcacagg
tggctgtggatggtcaggataactgctgattaaacagaagcccatgacgcatccttctag
gaaatgaggcacgcccccagaaatgccacccgcttcctctgtcgcgctgcctcaaaggtt
atctgagtcatcagcactttccccagtcacccagcacactgaagcacacagccaccactc
tgagctgagactgtcgcctctgtgggcaccagggtgtcaggactgagtagctttcttgtt
tctgctgtacacccagccacaagctctgacaactccagcccagggtgtgcgtatgactct
tatggggtgggataggggtgtgggggtgatggtgcccgcagactttccaagccacagtct
ccacatctgtgaaatgtgaggatggagaagccagtagcagtatatgagggctagaccata
ttcagtcctctggtcttcttacctgtgagacccccggctatcacctgggaccacactggg
ccacaaacaggtattgatatactgtttgtggaggtttgagggtggtgtgggtgactgtca
gagggctgcagaccatcagaagtgccacatacaaacaaaaaattgggtatcgctggttgc
cgcaatgtgttgatgtcttcaacccacacTGTCCCGTAAGAAGAGGGTG
Primer
(+)TGGCAGTTTCTTCTTAGCATGA
(+)CACCCTCTTCTTACGGGACA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.