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Mouse element [ mm16 ]


Position: chr12:45,503,506-45,506,757 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nrcam(intragenic)

Timepoints:
e11.5

Midbrain staining is located at forebrain/midbrain boundary region.

Expression Pattern
forebrain (10 out of 13 embryos) 
midbrain (mesencephalon) (10 out of 13 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 5

Fasta sequence
tAaaTTGCTCAACACTGCCTTCTGtataactatgggcttttattagtgtgtaagacataa
tgcaagaggggctaaagggtgcacacctgtaatccctaagaatgaatgtgagatcttggc
cagcctgggctacacagggtgatcttgtctccaaaaaggaaggaaagaagggaggaagga
aggaaggaaggaaggaaggaaggaagggagggagggaggaaggaaggaagaaaggaagga
aggaagaaagggtaaaaataagttttgatggcttcccaatatttatcttcagttagggct
ttcttgatacgaaggtaaaggaataggaggagagggaatcactagcgtagttaacgcgtg
tggcttggtaggttttaaagcgatcatccaattatttcccctctccacagggagcttcta
ctctcccttttcaaggacacccatcccatactcatcctgcacatggtgaaatcagcctta
accaatttcagagagcaacattcctctataagtccaccaggagaacacagtgctcacagg
ttaattggggacatagttacaggacttggacataggcaggagcaaaacactcggggaaga
aggaagaagacagtgttgtcctgcagtggtagcaacctggttagagtgacagtcgttgaa
agtgtgacacatcttttcagtgtttctagacaatctgctgagatatttatttgtttactt
atgtgttcacctcccacccggactgcagtcccccagctgctcagatttttaagtctagac
agatatttccttgaacaagtcagtgttacatgctgcttcttgcatgcagcggtttagaga
cttaaaagcccttccatattatatctaagactgaaacaacttccagtggaaatggtgctc
tgtgcctaggtgaggcatggtcttcagataacctagcactgacagacacatgtgcacctc
agactgggactgcaggagggttagagacaagggagattcactattaaagcaggaacagcc
agccatctgctatgcatttgcttattatcagcaatctgaatattcccaggcttttctagt
tattccaactgtattttttttctccttttatttctttcccataacaaccaagcttgtgtg
attttctctacagatatttggataagtaatagtctttaacattacttgcctagcaaaagc
aatagaaaaacttgcctagaaggcagtggaatatagaatctgaaccaccatttctgtggt
tagctgatttgtgtactgtgtacaccagacaggagatccacaaaggcctcaagacaggct
gtagtgtgattagcaagtgtgaaatgtctgcagagagggttggaacagctgcccctttgt
ttatttctcgcacctttttcgttaaaggatgcccttaagctggaacaaaggaaagtggtg
acttaatgagggtattcaaagtaggatttagagctgtggcctgacagaattaaacatgct
aacatttaactacagtaagccttcagttggagccatctcatagaaggttgccttccgtga
ttattcaaagacactgtaacaagcccttctttaaaaagcattcaaattagatattaatta
tttaagtggggatggggtggggagaagggtgctttacataaccagctgttcactctttca
tctaacactcaaatgctgggcatcttcagtgtgccatgtactgtgcaggaggttatagtc
accacccttgtggtacattaggaggtggtccatgaagatgtgttctgataacaagtttct
ccttagtcacagtcaagaactagtttgatctatcttgaaaataagctaaacttaccaaaa
aagagaggctgagctatttgcccaggcttcctgccttttagggtttttgttgttgttgtt
gtttgtttttgtttttaatatttttgtgttatgaagaatatgtttaatttctaacgtcta
taacactgtaacccaagattttcaataaacattttctatatctgaatatctaaagctgaa
gagttttcactcttgatggcgagagataacaagacaatattgttaagagggcagctgagc
agaaaatcatttgtatgtcttaactcacagtcaccttttagattctccctagttgctggc
cacaaggttataccatgcggccttatgcttttccctggcagggttcaccacatgatctct
ctttgcacaaaggtttactctgcatttaaatccatgtgtatttggagcaaggaacttatt
tattccctgcatgtggtatcccagaataaattccaataaatattcattgaactgaatttt
cactggtacatgcttatattcccagacacttggagatctgagacagaaggattttttgag
cccggcagttcaaggctgatttgagaaatgtggagaaaaccatctctcacactcacttgt
gctcactccctttcatagctcattgtcttcctacccagcttaaatagctactctaaactg
agcaaattcagaagcaagttttatctttttaaagattcttttaggtgcatgagtattttg
cttgctttgcacgtatgtgtgtatgtgtgtatatgtatgtatgtatgtatgtatgtatgt
atgtatgtatgtatgtatgtatttatgtgtgctatgtgattgtttgatgctcagaaccta
tggaggcaggttgaaggcattggatactcagaactttggtcacaggtaaacttccagata
gatggtgggtcctctgccagagcagcaaaactcttaggcactgaaccatctctccagtcc
ctagatacgagctttattaagagagaactcaataactaattcagatgcctctgttctctc
tgacaagacgaccaccaactcaggtaatgccagcctcctgcttcaggtgtcactgaacta
gacaccttttgttttacatctttttacagaataatttggttactagagtgtcactctgtg
ccaaactatttacagcagacaaaggatgccttgctgggttacgcttactcttagttactt
cccacaaaggtaggatgcaaacttttactgaatgtcactgaggtgtcattgagaatatat
ttcctataaaagatgacactgggcatttttttttttttttgtaacttgcctgaccatttg
catgtcttctttgaagaaatgtccactgtcctgtatagaactgttccaacaaTGAGCTTT
TGTCCATCTGCA
Primer
(+)CACCTTGCTCAACACTGCCTTCTG
(+)TGCAGATGGACAAAAGCTCA


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