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Human element [ hs1593 ]


Position: chr20:39,574,314-39,576,895 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MAFB - TOP1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGCTCCTCTAACCCACTGCTccctgccccggcaccgctgcagtcctgtgatttccaaatg
ccaagggaagttctgtggtcctattcatcttttccttgtctggcaggctgggagtgcagc
ccctctggggcgcacagacagcagagtagccctgaatgggtcaacctttcaccaacaaca
cccacctcaaataaaagccatcagcttgccaggattggagaggaagcttcaagtccccaa
gaaaaacccaagggccatgttcagagacttggccagaactgagccctgttcagcctttgt
ctgtgtgtgacagtgtgcctctctgtgcctcagtttctccatctcataacagtgaattgg
tctaaagcctcgaaagaaagggttcttccaactccggctgcacagcctcttccagggcct
cccatcagcccagacccagttaccaacgcagagggaagagtgccacctactgactcccag
cctccctccaagacactgagccaccaaaggagtcagcggaatgtgcaaagctcaaagtga
gcagttgtctgcattctccctttgcagagccgcagcaacctcccctttcatggggccaag
gggcacccctccagcctggacagagagctttagctgcactgctcacccctgttgtcctct
gctccaagccctggaaagccaggcgcctccacgccatcctgcatctgtgccaggcccaac
agcacggtagcccccggctgccagcccccctcacactgggccggcggctagaggtggaga
acaatgatccctattgtgactaaatttccccctgaagatctcattcaagatgttagagtg
agcgatcataaaaggaattaatagttgattcgctgtataatttcctagttcaatatactt
tagtgcagcaactaaatgaggcgtcccggccgttcagtggggccagatagcgactttatc
actgggatctcaggctgaggaataaaagcaattcttctgaagtaattgcgtctaattaaa
agaaacatttaaaaagtgtaaccaaaaggaattcatttcaaatggaaaattaatgctgaa
aaatagccctgagctctcttgtcgcagctaatagccaggcagccgcagaataattaaact
gttttgaaatgtcgataccatcctcatcgggagaagatgggcacggctgagcacatcccg
ggcatcagcaaagaggatggcttccaaagacatggccagcagttggacttgaggtcagcc
acaggcttccaggtggggtgaggcccaagtcaccacagacaaggcaggaaaaggtttgta
atacggtatttaatgaaggaaaccccacttcctggatatctgagcaccccactgactctt
cagaacaaccctgcaagtcaagtatcattagtagtattatcatcatcatcatcattgcca
tcatcagttcaaaaaggagactccttgtgactagctaccttgtctaaaatcacagccaat
atgtattaacagcaatcaggatttgaactcaggtctgcctggctctgaagtccacatcaa
ttccactacactggatgttaggattcagcatcaggaaaaaggctgtgtgttttctaacac
tgtcattctcagttctgcctgcattagactcacctgacacccccctgaggagctttaaaa
aacagtcccaagccaggcgcggcggctcacgcctgtaatcccaacactttgggaggccaa
ggcgagcagatcacaaggtcaagagatcgagtccatcctggccaacatggtgaaatcccg
tctctactaaaaatacaaaaattagtgggtgtggtggcacatgcctgtaatcccagctac
ccgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagcctt
gatcacaccactgtactccatccagcctggtgacagagcaagactctgtcaaaaaaaaaa
aaaaaaaaaaccagtcccagactctgccctcaaagactctgcctttattgatctgggaac
agcatggggatgagcatttttttttcgagatagggtctcgctctgttgcccaggctgaag
tgcagtggtatgatcacagctctctgtagccttgacctcctgggctcaagcgatcctccc
acctcagcctcccaagtagcttggactacagacacacaccaccatgcctggataattttt
ttctttttaaagatggtgtctcaccatgctgcccagtctgtggacatcagttttttgttt
ttttttttttatgtttcccaggtgacttaactgtgcagctcgggtctagaaccattagtc
taaatcccagtcatcaggcacccttcaccccatgaacattccctgaaattttcctgctca
cttcccccggggagttttgcctcgtgaaaaatcgaagggtgaacacttcccttacaagtt
tgcagccaggttgaaatgaactaaaagagactaattgagaaccagcacttagtacatgct
aaataaatgttagttttgaaatggggggcagcaagaagtaaGAACCCAAGATGAAATCGT
CC
Primer
(+)tgctcctctaacccactgct
(+)ggacgatttcatcttgggttc


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