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Mouse element [ mm1589 ]


Position: chr12:109,189,361-109,192,204 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Bcl11b(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCTCGACCTTGTTGGGAGCcacagggtgtggctccgtgcagttttcaatgggaaagtga
ggagttaggtcaggcaggcaggtcctggctcagcccagtggcctggggcaagtcctgccc
ccccccccttagaacacatcgggtggtacctatgaaagaagcctggtaatgaagcacagg
ggcccctggaattgtcgccaaagaagcagcctacagggccaggcacaaaggcacagataa
agggaaccttcctgatctcccagggtaggatgacacagctccccacaactactggagaga
gacaagctacacactgtagctgccgggaactgttccatccaggagggcaggataagcagg
aacagcacccacagagaggctgagcccaggacacgggcccctccgactctgactcttaga
tcccaaagagagggtagggaaccaggggttcataaattagctgccccatcgccagaagca
atgcaagtcccaccccgactgttcccagccggtatctgtagagaccccagaacccacaaa
cttcaaacctacctcccttccctgggactcgaatgagtgacaaggttcccaaaacatctg
aagctgggctgtgtgggctacaagcttcccaccagcctctgtctgtcccccctccccccc
cccccccggcaataggctgttatattttctgtccctcgtccttcccagcaggtcctagtt
ggtatttcctgccatcttgaaggagagaggatatcccaggcaccccatctccatatgtga
ggactttgcaggtgagttctgtcagatggagcttgaagaatattaccagatgcctgtgtc
acacatgctgggtttcagagccactgaccaaggtctctgtccctgcccctaagtctccaa
cccagggatgctactctcccatctcccaccctgcaattaagaacagatatgcaaatgtac
ctccccaaatcttccccagccctgccccagccaagggagaggcactaatttataagttgc
agataatgtcaccgaccattcatccaaatgtgtcactaacatcccattagactgtaatta
ttttttaattaaaactaagaaaactggcatgcctgagccgactttatgcatctgttatgg
gttaaaatagcttttaaaaaatgtttcagagaccacagtctattgtggccgcggcctctg
ccaaagaaaacgcaagcttgcttattttctccatggggcgcaacagtgcctgtgtgtgcc
ggcacagaatcggctggccgtgaaaagaattctaaataaaacacaaacatggaatttggc
aacgccacagaagcaagcttaagactaattccagcatgcggacgacgctcacatagtaag
tctggctccagcataaatgaaaccaggcactgtaaaataccacggcaagtcggagcctcg
gcttaaagagacaggacgctgactgcaggtatccgagcttataaagccagctctcgctgt
ctccataaatccataggttatgagctgtttgcatccagccaatcccttcgtaaagagacg
cgtactaagagagaaagaaaggggaggtcagcaaatggcaaccgtcactttgcacttgac
tttctgctcccattctgggggtggaggactgtgttcattatctcaattagagcagaaaga
cggagacctcaaatgaacatgcgtcgggaacaacagcagaaggagtccgtggatgaaaga
cgagatgcccagaaaggaagaacatggctagaagtcaaggttggctggggcagcgagagg
aatatctccacccaggaaacggctgccgtaacgatcttgggtatgataattacagttata
acaacaataaaatgtaacagtgacacaaagccggctgctgcttgaggcagggagtgtatc
acaactgggaaagactcaacgggaacatttctggagtctctgtgcctcagtctccccatc
tgtaaagtgggaatgatggcactgccttcctctcagagacaggctaggagtgccagcgta
aaacccgtggtaagcatgtgtcctattgtcgtgcctgactggaacacttggttggcactg
ttcctaagtttcagatgaggaaacagcctggctcacccacccgcaatcacagctcgtcac
agccagggtgagaacccaacatccacttcaaagcctttggtctccctatgcacgctcatg
ggtggccacactctgaactgaccatgatgtcttggcctcggtacagtgagttccccagca
agcacggggaagaaaatctatcttcagagacacactcacaccaaggtcacagcaggctgc
aatgctaagcccggccatgtcggtacacgcctgtaccaaagacatccagtaccagacaga
aaggtaggaggggcctcggtaggtgctacctcctaagagcatactctcaaagtataccta
caaacaacaaacaccaacataaacgcgcgttaacaggcacacagagattcaaacacacac
acagacacacacacacagagctctttattacagacattgtgccaggcccattgaccctgg
cagaggcagtgggaaaaacgggagatgacatgaggcaatgtttggctccccataagaagg
cttggaacacttttccctcaagccctcatctctcctgcaggtctgctgaggtagcaggcc
aggctagtctcaccacaagctctcccttgcccaaacccgagcttagccagctaccaattg
gccagtgccacagctacctgtccaggtgaaaccaggatgtccccagccgccatcagccat
agaaGCCACAGTCTGACTCTCGAG
Primer
(+)ttctcgaccttgttgggagc
(+)ctcgagagtcagactgtggc


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