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Human element [ hs1580 ]


Position: chr6:18,612,650-18,614,840 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR548A1 - LOC101928519

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAAGGTGGGGATGGTAGAGtaagataagtgaagtgtgttttggggactttctagttcca
ttagttttgttcacaaaactgaaggttagcatgtttgtgtgtcctcgttgctaactttgt
caaaactttgctttcttactagctctaaaatataagggactggttactcttaaagtttct
ccttgcttggacaacatcccctctattattctgaaatcactctgggagtgattaccaacc
acgataatcatacccacagtgaacactttctgatcactcattatgtattaggtgctgttc
caagcactttccatgctgtctctcacatcatccccccacttccttatgtgtttggtgtaa
actctcatcactgtcttatggatggagcatgtgagggctatcagataacttgccggggct
cacatagctaatacgtggtggagctgggatttcaaccaatgcactatcaataatgttcca
gaaattttttctcaggatatcatttgatcagggttgtttgatgacatagtgaaatgttgc
aactgataaggagaaaatgaagttggctaagtattttgtatggaccataaatgaattata
acctgtgtgcttggtcttccactttcaatgggttctcctggcaaatgtgataagacgtct
gagaacaaagcagtcatggagaagacaggaaatcatgataggctgacagtcattgtggaa
ataaaacaaatgttgaggtgtccttaaagtctaatcactagtcttatactctaaagggaa
actttgataccaagcatgaagaatttaaccctcttcataattccgaatactgggcatata
atttgtgtggggattacaacctgaatcttcttaggtacctccggtttctgacacagcagc
agtctttgaatcacggagtgttttttccctgccgcttaatctttgtagcagccaatttat
agacgggaggagtttttactttatctgttccaaccacacttccactttatacttttgtac
tgggaagcagctttggctgtctgtggctcagtgtaggtgtgccagtgtgagtgcactttc
ctgtgtgtgtatctggatattcctaaagatgttggaaataatagtgaacaagtaagggag
ggagaggacctttattgtgtaacaaactgaaggcaccaaggaggctgcatttgttgtgag
tcaaaaggtttatacaaagattttcttagtaatgtctaagattttaatagggtaattaat
ctttttaaatgttagtgccagattatgggatcagctattatccctggctgcagagtggtc
ctttgtgtgttgctatgaacagggctaagtgaagagaatactcaggttgccaaacaaaga
tatggctgcagctagcttgtttaggtttttaaatgcattttcttgtgcagttaaaagaac
tcctgtttccgtggggctatcattgccctttaatagccattgagttgaggggagagatag
aggaataaaatacaggctttttgctttttacttcttaacaaccaattattattattttta
aaataatgatgggtatattcattcgagaccttattttaagtcaggagaaacaatttaaca
gaaagaaagctctaaaagaataggagtgaaaggttttcatctgatttaaaagtttggcct
gtttctctttccttaacctaagtttagtgaaaattgccaagcaatccagcaagccaacaa
aaatgaaagggaaaacacagcagctaatgagacttggctgtggcctttaagcaagagtga
ttatttaacatagcttatcaaaatattgattaaaaatagatggcttgtttctttcaagtt
tcgatacatatgaaagaaaaaaagttcagaacatagggcatcatgtaaaaaccctgtagg
tataatgatattgttgcagcccagccatgacctctgctctggctttgcttaaactacccc
ttggcttcgacttggatttctgctctcgctgtctaaacgaggcagtttgtcagaaccaca
tgtctatttgtttggcaattgattgtagttgctgcttattttccaaactgttccaactat
tttgtttacatgaactattgtgattctcagctgctaaatactgctgtagacaagatttct
cttttgaattgTAGCTCTTCCCCTGTCCATG
Primer
(+)ggaaggtggggatggtagag
(+)catggacaggggaagagcta


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