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Mouse element [ mm1579 ]


Position: chr18:15,331,573-15,334,509 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 4933424G05Rik - Aqp4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACGTTCATGTGATGGCACCTtagcctgtaggattcacccggcaagtgcagatttactgat
aaaacaatgtctctttgtattataattccaggaaatcaaatttaaggtttgtatttggtg
catatttggtagaataaacagtaaagaaggcatgagaatgttcctatagatcttgtctaa
tgcttctgttaagtgtagctaccagggaagccagtcacacacacacacacacacacacac
acacacacacacacacacacacacacacacaccactatcctggtcctaggtacagaactt
ggggcttcatgtatgttacgtgtgaagcaggctgcaccactgacatacacccaaccatag
cacagtcaactaagagagggactggaattgacacactaaggcagcattctctttaggtca
cactcattaatatgataaaatctggtcatgttcaaaaactcttaaagaatgaacttaagg
acattgacacacatctgtagtaccaacactgaggagccacacgaacttgaagacagccca
aaatgtgtatggcaagaccatgttttaaagggggaggggcgttaattttgtgtccagtct
ctaaatactgatcacactgtgcttcttatatacttcaatgagtctaaggggctaagttac
aatgcatgtatcaaattgcatcttgaactatgcttaaaaagacacaatagagtacttaaa
tgtaataaagtcacagtccacccctatgatgtcagtgtggtggattagagcttgccaggc
cccagttgctggcagaaaataaaacagaataaaaacaataatataaatcagcttttagga
agagacacagaaagactgatcaattatttgggggaaaagaaaaaaaatctgcaaattctc
cattgttgaatttattttaagtagtctgtacaatttttttaatgcatagaaaatgaagct
attgtacagaaattgattgaatctatatctgaagggctcataagacaaggctttctgtaa
tttgtcttcagggctgtggtatatctctcagttcttaaagagatgctgaaggaaggatga
acctggactggggtggggtggggagggcaggggggtaacccgaatttgggctcagcacag
agcttcctctgtaaacttggggctgagagatccctgaagagtttgcatgtgatactccac
tgctgcattcatataacatcttgactcaataaagacaccagctaaaggaaaggaagaaaa
gaaacccgcagcaagacaataaaatgcttcctcctctccccccaccgcctcgggcctttt
tcctttgagtttcagagcttgtcccactgaaactcatcaatttttgcttttatgctggaa
atgcctgaaaacatttgaagctccacagctgccccttggggtaaaagatttcccaatgct
gctatgcctcacagcatgtccccagagaaagccagggggccacaagacttggagcagaag
gctctctccttttggaggctgggaccaaggactcttttctctgccaagctgggaacaaag
gacagaatctgaaagcccctgtcccaactcctgacctcaggccaaaggcaaactatttta
tctctgggtcctagtgacagtagctcctccggcacctcaagcccacgtgaccagaaacct
ttgatggcggtcggtcctcctgtcttcagcttctctgcctgtccatttattattctgtat
cttttcgagagctgtgggaaactttcataaccagggactaagccaggcgaaaacttgttc
tatttggaattcgtaatgaaggcaaaacagggcctgggttctctgaaagcctcctttgct
gcctgcagagcccgagggcacaatcagactctggtggaggaggcctgggagcagattggt
taccaagaataggagggaacaatatttgcctcccaaacactagggctgctgtttaccttc
ccagctgcaaggccgagagataaatgcgcagttcacaagaccataaatgccaattttttt
catttctaattttcagaaaaaattttttctttttgttaaactccccctacacgaaagatt
agaggaaagggttagcatatttgatttcctgccccgagggggaaaattctttattttgaa
cttttgaccccaaatactgctgttgctttttcagcgatgaaagtgttattgggggctgga
gggggtagacgtggataaaatggggataaatggatatattttaaggtgattgggacttgc
aagggatggctgtcaaaactaacttctgctgtttggatggaaaacttggtctccttttga
gaagttctcacaaattcttcacacttgatcttagccaaaaggccgagaagcgattctcac
aaattcttgactgcctcaaatatgcttgcttaacagggagtcagactgaacccccacccc
cacccaagtagcaagcctatatgataaaaattcttaatttttatttaagtcaaaggttaa
tggtgagaggggggctggtccctcattctttcaagttaatgtttattttctcctccacca
tttaagggatttcctaaggccttcatttcactgctgacaggaaagtagaactcagacttc
atgccccagggcctgaataaagaaaaaaaagaaatcacaacaacactcgcatctatttaa
ctggctcagttctcggagtcttctcacagtcagagggaaaaactatatctttaggttaaa
tgaagctattctaggagatatttgccaaaaccacaattcagagaaaggtaattattgtca
gaaatgacctaggaatctcagacctacgtgattaaaaataaaacttagaaaggagctttg
tcttgctcccattcctgcccggatatcaatgaacgaaCGGCTAAAGGTGGCTGAAGA
Primer
(+)acgttcatgtgatggcacct
(+)tcttcagccacctttagccg


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