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Human element [ hs1565 ]


Position: chr2:67,427,102-67,431,497 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC644838(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTTTGCAAAATCATGCTACACAtttttctgaggaaagatttcatgaaatttatcagattt
tcatgaaactctgtgacccataaaaaaataagttaagaaccagtgctccagctgagctca
gtggctcatgcctgtaatcctagcactttgggaggccgaggcaggtggattgcccaagct
cagcacttcaagaccagcctgggcaatacagtaaaaccccgtctctactaaaatacaaaa
aatgagctgggtgtggtggtgtgtgcctgtagtcccagctacttgggaggctgaggcagg
agaattgcttgaacatgggaggtggagattgcagtgagccgagatcatgccactgcactc
cagcctgggccacagtgtaagactccgtctccaaaaaaaaaacaacaacaaaaaacaaaa
caaaaccaatgctcctaagttcctcaaacttctaggcatgactatttttctgtgatatca
gggaatcaaggggactaaagggatgacaggtagaaaaggggaagaatgagccatggcttc
ttgcctagtacaagtggaggcaacattagaccatagctttcaagtacagaattgtacaaa
actgagttcacagatgggctgaaatgaaagcagctttcataaccctcaggtttgccactt
ctcaggtaaataatgcagaatcatatgtagggttgctcctaaatatttgaagcaaggcac
tgaaacctgtgtattactgagatctataggtttaacctgattgatattttccatgtatat
ttaactgagtgacttctatatgccaagtataatatcaaacactaaagatatgctggtgag
ctgaacaggaattagaaggaaagaataagcaagacttgattcagccaaacttgcaaggga
attgggatacaatgaaatctcttattaccacaaaaccatagaattttggaactagaagaa
aacttgatgattacctagttcagtcctcctattttctaaggactttgttcagggtcattc
agttcaagtggcaatactgggattgaatcctacgtattctttcatctagcccatttatct
accctctattttaaattgtgtctccataacctatctatacccttttatttctagagtcaa
ccaatttcaaaaatcccttcagcctcccaaatacctagatgccaatagagaatccctcaa
aatccccattccacataccaagaagaaagaaaatttagaatttattgtaaagtatacaat
tggttggtatcaatataccaaccaatacaattggtctgtatcaatataccaaccaataca
attggtcttgatgatgagggcgaacaagttattgatgatgatgatgatgacaatactgtt
actaatgatcatggcacctaacattttcagcttgcttaagattagatactcatactcgtc
ctcttagaggtcatgattttcactatataacatggacattctaattcaggtatattgata
ccaaacaattacaaacttagaaaattttcaatattgaaatccagcttttactcagaaaaa
gaagcatctctggctctttaaaattacagtctcaactggtccactcgctcatgatgtcat
atacagtttgacgttgtctgggcaagctggtaaacatactgcttcctccattgtttaatt
cccttccctgagtgagatccttaggcaaccaggcttcattagttcaggtgctagcctcag
ggaactacttgttttaattagagggatgaaatggcattttaattgtgcacaatgattaat
aaacatgctgagctgctgcataatgatctgctgcttgaagagctttctcccttattcctg
atatctacatccattaactgattgttatccaggtgaagagctatcgagctctttctccaa
ccaaattgcacactgtctgtcctccaatttttctgctaataacaattattggaactaagt
cccattaatttttgtggtaacagagagacaagactaaaatggagagagcttacaaagtgc
tatattgcctatgtaatttatttcactgaactttcctgtaaaagggagataataatatga
ccaatctgacagggcattgcatagattaaatgagataatgtatgcaaagctggcccagag
aaggcaccctgaaaatgttaggtgccatgatcattagtagtagtattgtcatcatcatca
ataacttcttcatcctcatcagtttcatcatcaagaccataatcttcctcaagattagat
actcatatatttcctcttagaggtcataatgttcagtatataacatggacattctaattc
agggatcattttctaaggggtggtggttgactgaagattttcccaatttctcctttatgt
tgtatgaaagtagtttggaatgacttatgggaaatgtgtgcaaagaaagtcacatattat
acagacttaatatcaccccctcagtagttaaataaaatacttgctgcatgtctgaacttc
aatgaaaacagaaactaaagaactagatgataaagtgacttccgctacaaagcttcacct
gcttggcatttgtaatacttttattggctaccattgtagtttggtgactccttacagcat
tacagcttttttctctagttgcggacactagtatattgtttgttttgtgtttcctggaaa
ttgttcctcaaggtcatatatctatctccaaatctttgactttacttgatttgagggaaa
taattctggaggaaaccgaggggagccgccacaattcactatttgtaaatggttattgtg
atgttggatattacacaattgatcctatttcttagcttgaattattaaagacactatttt
taaaataggccagctgttctactgacgtacttatctgtatttttttgacatattaccata
actgcacaccaatacaactcacttatgcccaagaaaagtagttatgactgagcatgttaa
aagctaaatataaaaccactttctctcccacaaaatattaaggatttcatagaaacaagt
ctgccccactgaagatggcttcctgtacacagagtcattatggttcagtgaagcagatat
gattgattacacaggccaaattttaccttgcctccagggcgctcctaattcttgttgtta
tttcctttaaaggcacacaattgtctgcaagagtcaaaggggaaaggtgaatgaactctt
ttggccatggcagagcagagagaagggttttggaatagacactgaacctgaaatatctaa
gacagtgcagaaagaaaaagaggactgaatgcattttcatattttcctatttcctagcaa
ggaagtctttaaaatcattcacctgaagttccactaatatatatatatatatacacttat
tataatggccaacattaaaaacactgaccatatgaaatattgttgaggatgtggagaaac
aaactctcaaacacggcaagtggtgcgctacattttaccaacagtgccgagatttctgca
ggggagtggagcgcaagagtaagatgctacaacatttttggaaaatagttctgcactttc
ttaaaaagttaaacatgcaactactaggcaatccagcattccactcctctgcattaaccc
aagaaatgagagcaggcgtccatacaaagactttgacacaaatattcatagtagctttat
cggcaatcaccaaaaataaaaagccaaaatgttccttcttaacaagggaacagataaaca
aattattgtacatctaatgaaatactactcagaatgagaaaagaatgaatgattgatcca
tgcaataacaaagatgtatcttagttagacaaaaactgatatctgtgatggcagaaaaca
gtgcagagatttcttcagggcagtggagtgcaagagtggctataaaggagcatgaggaaa
ctcttgggaatgatgaatatgtttgttatcttgattgcagttagtttcatgggtgtatat
catgtcaaaaaccaaattgcacactttaaatacatacagtttagtgaatgtcaattatat
ttcaatgaaactgttatgaaactgttaaaataaataaatcgctttcttgaaattttttga
gcatagttatctgttctaatgggactggttacaatacactgtattaatctttggtgaata
tatacatagatatatgtttttctattaaaggctatcaatgtaaagagatgggttcaataa
accaatgccattatgtcagtatagacacaatcagaatattaggaagacttttctcaagta
aacaactatagcactaaaaacatagctatgtaaagacgcttgttgtaaactctttgACCA
TTTGGGATGTTTCGAA
Primer
(+)gtttgcaaaatcatgctacaca
(+)ttcgaaacatcccaaatggt


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