Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1561 ]


Position: chr18:52,971,887-52,975,873 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TCF4(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTTTGGGGCACATTTCATTatccaagacattcaaggtattaaaggaatattcatgcaag
cacctcacccaagaccaaaggaaatctttggtccttattcaaaaggttcaatctactcat
gaactagatatgggaaggatcagttgagaaaatgtgatttaagaagagagcatttgtagc
attagctctgaaagcctgaaccgcctttcaagctcctggcctagtttttaactcagaaga
ggatcaactttgtttcaatgataaaccaataattgcatatttggtggaaaagtctacagc
tctgtcaagcagcaaaggaagcatggtgacagcagtttcaggtgacgggacacaataaaa
acaatgaggaaagaaaatgtttgctttttctgtcaactgagatgtcagtacccattaata
aatctatctgctaaagctactcttattcatgtgggacatcaccaatttgaagtaaaataa
attatctttaattaaatggaattgtcgtcttcctcccgctatcatccccaattattacat
cctaatcagccttttagggagaaggcaagagagaaggctgaaaggcacattgactataaa
caatttctctttctgtcaactggtaaaatttttaattttaattattgattataactacaa
tttttcgatctaagtaatgaaaaccacaaaaattctgtcacttacagggggaacactgta
catggtcacttccaaatttcctttaactctttctctgtgaaaatttccaaaaaccagaag
aaatcactatgaactaagcaaattatctatttaaacctaatctattacttttatttccag
tacaaaagtaccagtttcaattaatactccagaatgcacagcactaactgaatgccagct
aggatgtatgtttttggttgttaagctttcaaaaactaggattacggaatggtatcaatt
tatgtttagacaagaatggtatatacactttaaatattaagacatgtaactggataaatg
gaggtgggtgatcttattaccaatgcttacgatttcctctgccccagttttcagctcccc
taattctctttttttgtaacttcacccaaattctaacaaaagcaatgtgtatttttaatc
aagtgattcatatgaaatatatgctattatcagtttccatactgataggataatgccctt
caaaataaatgatgaaatcaataagtaaatgaagtagtgtgtcactcccactccaaagat
acagaggtgaactattttcccaagagtgacaaagaatgaatttaggagcaactgggcaca
ccttcatttaccgtgccccttccgactctactcccaacaaccaggttggattttgtttgc
ttcactttttgttataactatagactttgcaagggagggtggggagttttcaccttccat
gtaacaacaaaatcaaccactgaaattgggaagtgaattattaattatttgttctacata
gaagataaatgtatctagaataaacaggtaagggtgttgactgttttctgactgcttagt
gttacttttaaaaatgtaattttttcagggtgtagtactgttttcatttagcatgccttt
gaattgccgcctacagaagtaaaaaaagaaaccacagctatacaagcctgctgactttct
tataaaagaaccagtttttaacttgtttatactactgattccaaatgaattcaagatggt
ggctagttaaagaaagcaagcccatgccagggagtttgatcaaagaacttcaattcagca
atgttcagttttaattgaccactaattaagctacattagtccaagaaaggtctgtatcac
tttgagtaataaagaaaagaattaatttaaccctgtgtcagtcagctttagtaaattcat
ctgaaagcaacttctcaaacgacaggcatgaaagaggtgtctggtgttaaatgccaaatg
tggtctacagaattcagagaagaccaggaactccgttttcaagggtatttgttactttgc
tagtgatgtcaccttgcaggtataattatcttcattacagatacaaagatgtcagcttta
ctccctgggttgcaaagggttgctttaaaattggattcaaaacatggcatcataccagcc
acagttttaactttcctgtattctagacaaaaatagagtggatttgcaaaatcatgagaa
ttttcaaaggcttggaactctccttctgggaaaagtgagttgaagactgggtgggggcag
ggggaataaaacaactgcaataacaccaccaaaaaagctcattataattaggaaccacaa
gctatgacaaccatgacagcagcattcaaagtccatgtgttaaaatagttcatttctgaa
aatccagttgcaaaatttttattttcccacacattgtacatcaaaatttttttatccaca
attctgatttaaaaaaaggcttttaggaagagggaaaaaaattataaagcagcaacaaac
tccatttcaggatttaacatcaagatgtaagatataagaaaacactgctttaaaacttgg
gtgtttatgactggtaaagtccttcaccttaactcagaggtaaatgacctatggtcttat
gacaaatgtcaaatagtaaaaatatgtttacattttaaaagtaaacccaaacgtcaatgg
tacgctggcttctattttatattaattacctctgccctccaagcctgcatgaagagcatt
ggctgttgtatcactgaaagccataagggtcaaatactcttgaagaggtgtactctgtgg
cctcaacacacattatatttcgtcttaatagtttctggcaaccaaagactgcattttcta
caatagtatttaataaataacatttttaaatcattctgccggtactcattaaaatgcact
tgtttgtgaaatgcaatagttagctctatgaaaccaaaatattaatgcaaattggaattt
ctaagtttaaagtggtatttgcataacaggaactaaacgtggcacaagctgaaagagtgc
acagcacacaaatgcttctcaacaccataattattacaaacaaaatgatggcttacatat
acaccattagaagcccaaggcatctgccagtctgtgtcaccataggcttccagtgctccc
aatgtctagactgtagcaacgagaggatgatggggaaagctctggaattgtctcacctgt
taaagtagcacaggtacaaggcaccaacaatctcattcccagtgcttaataatagcctag
ggctagcccattcatctgttgccacctatggttatcactgaaaagtaattaatatgattt
tgagtgcatgtatgaatgaacatggtcttcagcactaccaacgctaactgggcacatttg
tccaactcagtgatgcaggaaatggaaagatagtatggatgtaggtatgtacttacttaa
gtactacttaagtgacacaactttataacaacacaaagtcaggttagggactaaatgact
gctaaggacaagatggacagacgttttcatttactatgaaaaatatttggattatgtgag
taaatacatatttttaaaaaattttagatccaaggggtatacgtgcttgttgttacatgg
aatattgcatgctgctggggactgggcttctaatgtacccattacccaaatggtgaatat
tgaacccaatttaacttttgataaaatactactttttactaaaacagcaagagcagaggc
atgagctctgtaaaatttggcagacaccagctctctcgggagcattctacccaaaggtct
tgtctaactgtatgtatggacatatgcccgtatggtggatgtgacacattcattaggctg
cataaacatttcttggttgtctacaatatgccaaaaggtctacaaagatgcattaagaca
tggtcccTTCTGGAGGGTATCACTGGC
Primer
(+)tttttggggcacatttcatt
(+)gccagtgataccctccagaa


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.