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Mouse element [ mm1560 ]


Position: chr4:153,967,503-153,970,504 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Prdm16(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACAGGCCACCCACCCTATActataggtgttttgctgtgaggcagtgttcctaaaaactg
ctatcttattacaatgcagtcctatgaatgagcacctggacacagacgcatgctgaaacc
tgggcagcactgacccccaaaacttccctgtgtgttaccagtgggattaaaaaccacggt
acacaagcttggcatggaggaaacaaagcataagaatggtatctggtgggtgagccttgg
ttgctgtccaccccttgtgggctcagtacctgccttggtctaaggatctggtctcctgac
ctaacctcttccccatctgtccctccctcctcgacacactgattgaacactagtatgcta
gtcacccttggtcaccttcaggcctgacccttgggttggaaggtcatgatgctttcacac
attccttcctgaccctcctctcctccaccctcttccttctggataccgcagaacggggaa
gccaggctgcctgtgctcacagaacacaggccaagtgactctaattatggaccctgacaa
tatcatatgggtttgttaataaaagcgcgacccctccccatcattccctagcagctggcc
agcggcagggggtccacaaaagcctccctcccgaaggccccaaatgtggttgtatagaag
ggagcggcaagtacagccagtggtctccacagggacagcctacacaagcactcccttctc
cacacatagcctcagtttgaactgtaggttgccaacgctgctggtagcaaaaacagatac
ccaagtgaaatccaccaggccaggcctccaacagaaggtcttcgatgtgtgtctccagac
catgtctcatctcctgcatttctaagtgaacggcacacagccttcagagcctgtgtacac
acaggctggggccagggggcttaagcaacactgtactctgaagaaactttaaagcatcaa
atcacactcagggcagggagacaaacaccagggcaggaggctggtccctgagacacacgg
gggctggtgcccgattttaaacatttcttacaagcgggaacttggagacaaagacggact
tgctttcttctatgtctctccgccctttgtcaccaggagagaaacccagccttcccaagg
ttccatccaacttctctttctctaagactttctgatgctgccatcaaatccacccaaaaa
aaaccacagggaaggccagtcggaaagcgtggatgtgggcaggagtctgatgccagtctt
ttccaccacttcctacctagataagatcttaatcgcagcccccaaattatctgggctgac
atttatcaacgcccgtcctccaggccgcccgcgctgggccatcggcctttcttcccggtc
tccctctcaatggaagttaattccgagtacatgatttatcttgctggggagcagctccga
ggcggcccaccttttcaaagggcgggccgggagtgaattatagccgcgctgtccagtgat
tgggttccgcggggacgcagaataggcagcagtgtgtcgcctgatgggatgctgggcctt
ttcagcccgtgaagaaaaaagattaggcctctgacggcggggctgacaggcgagcttggg
gcagcagacaaaaggccgtacctgaaagctggccgagcccctgccctgagggggtgtgca
cactgccctaacaggctgtggctgcatgtgccccgtgcccccaccttgcttaggctcccc
cacctcctgccccttcctctcttctctcttccgctcattcctctccttcttgtcctctcc
tctctgctctgccctcctcccctcttccccttcctcctcctcttcttgctctcccagtct
cttaacctccccatctttccctcctccctcctcccatgctctcctcccttctccctccct
tccttcccacagcaggcccttgcacaccagggtccctcacagtgccctgcctggctctca
gcccttccacaagaatcctgcctctgtgttgattcctcccctcctcagcctcgccctcag
aaagagggagaatcctgcccatcatgccatgctgcccctccctccccagcacagagaaca
cacagaagtctgtgaggacctgcccccacccaagggtggcaaagggcaaagttgttccct
cctttctgctgttcccaggggacttggcaggcaggctgagagtgtgggcacaaggaccag
cctgggccactggggcccagagctgagggtgaaaacagagggagcgctaggctccccaag
actgtctggagccctgtgaactgagccaaggaggaaccccctccacgttcatcagctcga
gtgtgctctccgtgctccccattgtgctccccatgctctccgtgttccaccgggcatccc
cactgagtttccccagcccttccttgcattccagccagacaccactcatgttcaccatct
tacacagatttggtcactctctctcgggcctcccactcctggcatgcagagccttgctaa
agacatgaacacagaaactgttcctgtcaacacagctcatgttctgtctctaggtgtgtg
ctcccgactcccccacagaggatctaaccatgtgtgtgctccccacgacacccccacagt
tcatcttaacaatcctctggctcccatggctaccttatccaggaccatagggaccccaca
gatcagagatgttaaccaggaagtgactgtcacatcaagctactctggattctcccagaa
agaagccattgcctttgtactgatctgcatgaacattcaagaaatgttaagtattaaaac
aaaacaaaataaaatgttcctttcaggatcaggagtcaaggagagatgggtgaggcctga
cagacagctagagacactatgggatgggtggccttttgaggcctcctgattcttgcccca
ataccaacatggacgaaaacagggtacaggtatggattggaaTCAAGGTATGTGGGGGAC
CT
Primer
(+)aacaggccacccaccctata
(+)aggtcccccacataccttga


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