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Human element [ hs1550 ]


Position: chr5:92,741,502-92,744,743 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ARRDC3-AS1 - NR2F1-AS1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAACAAGCTCTTTGGTCAAGaagaggtgagagtttacagacatgatctttacccattac
ctgaacattatttccaatgccagcaaatatttttaaaaagagtaaaaaatctgaacctgg
gatatgttgcatttgccccaaatctaaggcacttagagaattttaaaactcattcctcaa
catctgaacttcagaaagtaaaatttccaggaatgacagtatcgtgctggaaacattaat
gtgccagcacgaaataatatcattctgtaggaggtaataaaggtatgaattatgtcaaat
tgtatttggttcatggatgttactatgcttcttatgggcagatacagctaacaggcacaa
gaacacctgcccatctccctcagaaaattaaagtcgtgtgcacaaacatccatctgagaa
attagaggactgtttgtgacaaaatgaaaatgtgcagtgttttagatatacctcctaagg
aaaaggaatatctcctgttacagcagaacatacattttctcctggtcctcattgtagaaa
gaaccattaagcaagtggtggcttctactcctgttaggtaacagaatatgctaaatgaac
ttgcttctatgctatatagcaccgccattatggactctagccattaattggtttggggtc
actggccatcttagttaatgtgaggaatctattcttctttaagtaaaatgtacaatggcg
tctcctattgaaatgggccagttttcaaatgatatgcatcattatgcatgtgtcaatgta
cacatgtatgggttttcctgcatttatttatttagggtaagaaaacagtccattttgtaa
agtttaaagaaagtatttacaggtgccattgtgtaccaaagtttttgaaaagtttgagaa
aaatgtggcacaaggaaaatgcaaaactctatgagcctcattgtgatttaacccttttgg
agccaaagcactaacaggggaaaaggctgcctttctcttctttccccctctctgcggatg
catatagatgacaccacaaacagaaccatcgctcctgctacaacctcgataaaaatgtgc
tcagttaatctacacaacatagagtcatcctctccaaaagtaattcacttctttaaaaac
tggaaggaaaataaatatggtacagttaaattgttgagtagaggaatctatctggacatt
tcacaaaacatttcattatgctgacaattcccagaagtactctcaagagtgctttaagct
gaggattactgcgctggagctgatggactttttttgtagcccctttaaaaggcagtgaac
cgtttttctattttatttaaataatgccccttaaaatggatttttagaggtataataact
ccttaagagtcagttatgctaaacagtttctcttgatagaaatgttgtaaaactcgttaa
ctgcacaatttcagatgccggcttggtgaacactaactgacatgtgaatgaccagagttt
gtaaaataaattgcaatagttgttgtatcacacagctagcactgcacaagctggaggcca
cgaggggctccaatctgacagaaaattacttcaagatgaatgaaaagtgcttgtttctct
ttattagtttttagagaacaatgaaaatgtggaattgtttacagagggctgattaaatgt
ggtcagtggggccacatccctactgctaactgttagcctccccctccctccggcccccaa
cctacacactcacacaccatacaactgcaagcacccctcctcaccccacccccaccctca
gcctcctgccacatgcatcttcttatgcgctattatggctgcacatctgtgtgtgaaatg
tgctcattctgacattccactgctgctcggcgctgcagaggcctttgttaggtaaaacac
tgttgtcaagcctaacaagcaggtcatgcaatttgctggacactgtggcagagaatagcc
cacgatggattgcttcggcctcagacaatgttcagttccatgttggaatacatacatatt
tctttcattgtgcagcactacgaaaagtcatgactttttttttaagactttgattttttt
aaaaagtaggttccttgtgttagactaccccagaatagcctgtttgttgtatttacttag
gataactactgtcttacggctaaaggaaaaaggcatgaagtgctttaattggtcatttgt
ggcttaattccatttatgtttgaccagaaagcacagcagaggaaaggcactagttaccac
cttaatacttaaaggggtggtcaaaaccagggcatttaggaggatgttgtggagaaggat
tctcactgtaaatttccacaaagtaaacagcccttgatggaaagaaatatgataactcat
taataagcatatgtcaagcacagagaaaatagtctttttaccagaccaagctaaatgaat
tagatccaaaaaatgttttggtaaacgaaaaaattaaggaaaagcaaatcactaccattc
agctcaacaaacagccttccacggcccacaacctacctcactcctaacctctcccttata
cacacacacacacacacacacacacacacacacacgctgggaaaagcagcagtaacaggg
agcagtttgaatgctatttgtggcatcttaacacaatacatagcccacaccccaaatgtg
caagcaggattctctcccgctctgtgcagaatatgcattctgagcctattatgtgtataa
acaatggcatatgtaattacctttctagggtggcaattattcctcagaatcaacaaccag
agttaaagcatgttcccccaaaagacatttggggatcaattctgggtcaattgcgtcagg
ctttgatttatcacatggtgtcaggccatgttaaaaaaagtaagttaaaaaaaaaaactg
tatgaggtaaaggccaatggtttgactcaaattggtttgtttccaactttgctttctccc
aattgctctgcccttcctccattctcaaaacaactgtgatttgctgggttttagctgtta
gacagtttgctgttcaggaatattaaatgcagtaaatctggactatgtccagattcaatc
taccctacacacacacacatacatacacacaccaggcatggggactttctcctaggatat
ggcacagagtaggggtgaatagttcaggctttggagttcaagAGGTCTGGATTTGGAGTC
CC
Primer
(+)ggaacaagctctttggtcaag
(+)gggactccaaatccagacct


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