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Human element [ hs1549 ]


Position: chr3:147,753,310-147,755,618 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: ZIC1 - AGTR1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTATTTAATACAGGGGCCTCAatagaatatgttttttcatattattataaaacaaagtt
taagactaatttttaaaaaatatcccacaaagtttattttgaataatctaaacatatgat
attatagggaaattgctattacttttctcagagaagtaacatccatcaaaaactaaaacc
aaagtttctaatatgtgtataatttaaagttaatttctcagtgagtcccctttctggaca
tgatcacataaaaaacacttatctcttaattagtattctaattaaggaatatatatatat
agagagagagagagagggagagacagaaatgtatgtcttataaacaatgtatatcttaca
aacattgagaacataaagtatataatatgtataatacaaatttgagaacatgcaggcttt
ttaacttactgaaatatttcatttcatcagtaactaagctaagaatctgcagtgcagtcc
tttaaaatcttcctgatcaaatttaattttactgggtgatataaagtatctatttacatt
cccaacccattaaagaaaattgtaaaaagagttttaacaactgtgcagtttagttacaat
tgtttgctaataaaatactaattttatttcagagaaagtaaaaattactgagagtagcaa
agcccaaactaacacacagacttcattatgttccacctagacgtatgcatgtgtttataa
aatctgggctctctgctttacaatacatagaataactaactaattttgaaaatccgatct
tgaacctaattcaaggggtaaacctctcaacttaacaaaaggaattattgccggagatta
aactgcttgatgttcttcattgttctagttgagtcaggagggaatattaattgagatgtg
ccatagattccggtgtgtgttccacagtggttcacaggtttcctggtggtccttccaacg
ggaatagcataaatgagtggaatcagaaggatcattctgaaccacagtagttaaaccatt
gttctgtttggcacaaaggtaatggttggttgatttgctttatttctgtgctgttctgat
ttttccccccatacaccctaatctctatcacttcctctgtgagtcatcagcagctggacc
cagagagagaccacgggaactggctcccggaaaagagctctaatggagctattactcaag
ttcaattctctttaagtctggtaagaactgtgagttataaggagatagagaaaagaatta
ttttgcattttatgctttgaagagactccaaatcatgctgacctatttgtatttctgtgc
agacacatgatacatatatttctctcaatagttcttaacaaacaatataatttagatttt
aaaaagtaagtattttcattgttacttacaataatttaattattcctgctggattgtttt
gtttattggttttgattcggagtagttttttgtttgtttgtttttgtttttacaaatttg
agaagcaaaattttagcatctttttcccacacacagtatatccacaattcctgctagtct
acatctggtacagttaccattataacctcctttagatataaacatcctcattttctcaca
acacaaggggatcttgaattggattcacaaagaacagcttgatttatagttgttttctct
ccattctatttggaaaaaaccttagcatggcatcaggctttgatacgagggagttcccac
agtctgctggcaaaatttcgcggattgcatatcaacaccagagattaggctggagtttac
atttactaaagagggggatgttgcctgcacctgaaattggctgtggtgttggctatttaa
caagactgaatcgagagcccaaatttcagacttctcttgttatttaattcctcatttaga
atctctgattacttcaactcaagcaagatattttaaaattgtaaaaatattattaaagaa
agcttattgattagtacatgtctcttacaggtggtataaaggaactttacagaaaagtgt
aatcacagataatagcgactctttgttgactaacagtatgaaggaaataagatgagatat
ctgatagcaattatgcaaatagagagtttgtggtgcgcaagcctcccttcctcgtacagt
ttttgtttatttgtttgtttttgtccattagctgtcatctttcagcacccagtgtctctt
tgctctcagtcctccatctctgtcttcctagcatgtcatgtgttgtcgaggaggctcaag
ctaccaaacCCAATCTGTGCTTCATCCCT
Primer
(+)tttatttaatacaggggcctca
(+)agggatgaagcacagattgg


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