Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1539 ]


Position: chr7:77,474,358-77,477,351 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 4930402F11Rik - Nr2f2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTCCATACCACACACACCcataaaacctgtgttaaaacaaatgttactttcctctctc
cgtacatgggccctcccttttttgaaatagaccagaggaactgccattagatcgaatggc
aagtctttatggaaagtgttttgcataattacataccaaagccagaacagtcacctccac
attttatgggtcacaaaccatcaacaattgccacattattgtccacgaaaccttcgtccc
ttcattgatggagcggactccactgcctaatctagaacgggagaggatggaaatttcttc
taataagaacccaagaagattatgtcctcagtgacgccgtgtttacatatagttataaag
ttcagagaaccgaaggggagagggaaggaaatcggactaggcctgattaagaacacgcat
ccgtgtaatatagatagcgcatcaaaggaggaggctggatacctctcccctttcagtttc
gaccccttttctacctttgtgatgctgtaattaagatattcttatttagacagacagctt
ctctggtaactgaataatattagcccctttgatgtcaaacttttgacagttatcacacca
gcactgggcaatttagcacaaatgccctcctttaaaaagagagagagagagagagagata
gaaacccccagtgtctttgaagaaatctaataagtgcgatccttatcaccaggcgattta
aatcgccgacgacaggccacctagctatgaattacattcggttatacataataaagctga
atttgggtttcagttcattgctcggcggaagaaccctaactgcatcacctctcttctgaa
tcccaaagtagttgctcagatgaggagaaagcacccaagattaccaggccagggcaagga
cgttgaagagatggggactagtgagtgcaaagccgagcgccctttccccagttccgggga
gtggggcaggaccagacacccactctccggatgagatgtcgctgttgctttcctagcctg
gccgccaaatttgggatttgccagatggtgggattatcttcgcgtctgttatagtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagag
agagagagagagagagagagagagaagagaagaggagagatcgcgggtggagggtagaga
ataacgtcaagacagaaatctagagactgagctggctccttgaaaatgctcactcggtta
ccctttacccgctttgggccctgccacctcctggaccctcactcgagcctttggcatctc
ggattggcctccccctcgggcacaaacaacaccagcgccatccgggcccctcggcgtcgg
ctccctgcctaagtctcaggacctgaagcttagtgcccagatgcaaagagcaaggagttg
ggggtgggggtggggtaggaacaagcctcgtggaggaagagtgggtgggtaggagagttg
ttaagggaaaggagcaaagagggcggagtgggaggggtggaacgggaatactgacacctg
gaaggcattgtctttgctagagacacctgtcaatctctgctcaggggtcttgaggccagg
ggcggggaggccgccgttctccttggtgatgtcatctaggagtctcgtccctaaggaggg
tgggaatggctccgagggcgcagagcccagagggcttagagaagcgtgggggaggaaaag
agaaaataaacagaagtagctctctcggctggcaatttacatggaaatcaataatccaac
tttaatgttatttttaatcttccctgaccgtcttgccttttcactaggggagaggggatg
aggttacaacagcccatccctctacccacacaatcgctggggaagtcttgttatctcaaa
tcccggtgcaaccaacccttcccccagatccacaccccgccccccttttctgcgggtcgt
tccaaacgctgccttcaggcttgagaaggaaacactttgggacgagttttgaaagtcttc
cgatactgcaccgggtgaagggggagttaattaacgccaggcatgctcagcgagtgggag
agggggcctcggcgtgggtgggcgggccaggtcgactgcagaggtgcgcgcagtgcggga
ggcgcgggatctggaggcccgaacttgcgggcctttgctggcaggaggtgatcggaggtg
gctcgggcagggagcgcggagatgcccccaaggagtccccccgttaatcctggggaattc
tgatctcccacctactgggcccccactcccaacccaccgtgtgctacagaactctcattc
ttttcggccggagctaattagcagcctgccagcggcctgatttatggaaacgctcgggcg
ggcggagacgcaccgctagcggagctctggctgcctccgggcggagcgaaggaggagtct
ccaccgacctcctccgacgaatttccctcctccctgccagggggaaaaaaagaagaagaa
gaagttgctgtttcatcgcttcgacctggctggtccaggagcctaccccctcgccctaac
caccttaacctaggacgcggggatgtttaggttcctgtgggcaaggcagggactgtggcc
cagtagcagcatcccgcaagtgttgaggccaccaggttccagctccggctagaatcggag
ccttccagccctgggatctcagctcaaggtccccagtgaagggacgtcggatctaaaggc
tcttagggagccgcagtaggaccaaatcagatctctaggcaggaaggagagatgggcgac
tgcaaagggacagactcagatgtctttgtctggatcctagaggccgccgccggccgtgtt
cctttccactttctagttattttctttttggtgttctccagtgaggtcctctcttcggtt
caagcgagtgtccagcgaaaggccattcattattAGAAGCATTTAGCCAGGCGT
Primer
(+)ccctccataccacacacacc
(+)acgcctggctaaatgcttct


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.