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Human element [ hs1521 ]


Position: chr9:22,106,994-22,109,800 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CDKN2B - DMRTA1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGATAGTCTGCATTTCATGGTaaagactatcagatgccactaaaactttttaaaaaggg
aagtcttgtggtcaaatttgctctttagaaggcagtatggagtgcagatcagatgctggc
agcagggagatcagttagaagatggttgctctaattcagttgagaaatactgagacatct
gaaatattgaagacatcagtagtgtgggtgatgtgaaagtggttctaagaaactagcggc
aatcatccttcattactgattgggcgtggagagaaagagaggtagcattggtagccgtta
gtcaactctgagtgcaggcactggcatgtgcattattacccagggctctaagtggagaaa
gaaaacaaccccagggtgtcttcaaacctaaagcatatttcctaagcctttgcactctca
gtctagactaaaaacaaacaaagcagcctcctctgaaatgctggaaactttccccacttg
aaactctcagatctcttaccttgcaattctagctttcaaattccaagctgagcttccttt
cccacaccccgagtccttgtactggggattacaatgatcatttgtatgtactaggtgatt
gttccttccacatcaggggccttggagcggatgacctaaagctgctttctcctgtcctga
ctttctccacccagcactgcaaccatacatacaattttctggtcttgtagagaatgactg
actggtcattatagtcttccaaaaggataagagattagtgtcatgatgtggccttcaggc
agccagggggaatctccatatgaggtacttgttgactgtattacttagttttaggtgaac
ttcctgtggagggacaatatgtgcttagaaggacagagaaggaatgtattaggtaaggca
ttctacatctcagataaagaacttcaatgaattgttgggtcaaggtctaagaaacaaacc
agccgtcaatgggaaagttaactaaaatgaagaacccaacatacaaccccaaatcctagt
ttttctgactatgttttcttaaactgaaataatttctgagattaaaaagaagttgctgtg
actttgtctgatagatgtatttttttgttatatattagtttgggccttctatctctccta
ctttgttttctttataatagaattaatctctgaaaagtaactttactgtattctgatgct
ccattttgaataagtcagttcttctccgaatgggctctggagattggcatttgattgaac
agcttttgtgtattgattgttttaggtagactgggtactccatttaacttagtatttctg
acaataaatcagtcgagaagggagtattactctaacggtttgaacacttgtctatgcaca
ttgcttggtcattcaataagtagttattggtgagatcgggcacgttcagggtggtatggc
catagacaataaatggttacgactctgccttcagctgtaccagtatttaagttataaggt
agttaagttacaccagtgcaaaatcatacagtttggtcacagtcctacttgaggatctca
aacctagctccccttaacaaacatggaggcttaatcttggctttgcacactgaattattc
ctttagaaaaatacttggtgtacaactcatccttttcatttacaaagaaacaaatttgag
cagtttcacaatttaaaaagtctcccaaatggattatatttaattgtccatttccaatga
aactcactaaattggtaaatagcagtgagtgaataactgatgaggtcatactttcttgtt
ttggactactacaaacaccacggagcaacaacagattagaatataaaggttaagcaaggg
tttagtttttgttcaaaagccgttttgcttgttacaaaggctaccaaacctttgaacatc
agaccaaaccaaaaacaaaacaaaacaaaataaaaaaaaccccaaaactgaaagatgaaa
acatagtttgataatctaagctgctcttcctttatttaaccttgaatttatgagattatt
tttttccccagaagaaaaattctcttagggacactttcagcaatttaacattttctaagc
attacagcaaataagaggcgatcatcattcttcagtcataaagataagccaaggaatgaa
agtgttttgcaggtcatgtcacctgacagaaactttggactggtcctttcctggttcaag
agttcagccataatacctactttccctatcagctggctcaagctgataaggtcctgaagc
aagcaaagcttctttatgagcttttatttaattgtccttgccacataagggttgagggga
ttcgtctgtacagagttacttcttgttggtctattttttctttggaataaatcgctgtct
cccctgactggatagagtaaatagagtttgtttaaacacttttcatcaaattcctagtgc
ctagtacagagcttttaaccctaatacgtttcctgcgtgtacttattgaaggaataatga
caaactctgccttagattggtgactggctagggagaaacatggttcaagagctgaataag
taagagcaagtattttattgtatgcccatcaaatgtattcgatgctggtgatggaggtaa
gagtgtgatagaggctgagttctctgaaattacatatgagatgtcatctgccatttagta
ttagctgtgtctgtcttttttccaggaatttggccttaaaagagatcattcaaaagtatt
acccaaatagtgatttatcaggctttaTTGTGGGGAACCTAAAGTGG
Primer
(+)aggatagtctgcatttcatggt
(+)ccactttaggttccccacaa


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