Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1518 ]


Position: chr9:22,078,885-22,082,105 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CDKN2B - DMRTA1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTTTTGGGTTTCCCCATTGTctggtaaaatgaggagcattactaaacggcactcactttt
actgagtttgtttggatcccacagagaactgaaaaagtcaccattatggaagccttatca
gagagatggggacaagtcgccccaaagcagttgtcaatatctggaagatatttttctagt
tggccttatatttcatttctattttcctcagttctaattcagtttatcacaattaaaaag
aaaccaatgaaaaacataaatattggagatcatttgatttcattggaggctggaaaggat
agaaaggctgaaaagtggccgggtgcagtggctcacgcctgtaatcccagcactttggga
agccgaggcgggaggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg
aaaacccatctctactaaaaataaatacaaaaattagttgggcgtggtggcacgtgcctg
tagttccggctactcgggaggctgaggcaggagacttgcttgaatgcaggaagtggaggt
tacagtaagccgagactgtgcctctgtactccagcttgggtgacagagcaagacagagtg
tgacagagcaaaacaccatctaaaaaaaaaaaaaaaagggaaagaaaaaaaagaaaagct
gaagggtgtgctgggtcctgtcctgggtgagggaacaacttgtggaaaagtgaattgagg
cttatcggaatgtttggggctcctcaataatgttggcactctgagatacagaccaaaagt
gaggtaaaaagcgagtgtttcctttttttcagaataggactttactccagattttcttac
tcttctcttgattccttcaccatccttgatcgacattcacctcagatgcccatgtccctt
ctccaccggcatagcttgttttcttcttaatcttcttgtgttcatctagcctcacattgc
atttgtcacacttcgttgaaaacctactgtttgtcaaagtgtctttctagtaatccagat
atctcttcccccatgcctttggtgtggtttcggtagagtcatacagagcagcaatgcctt
atgaaaacgaattttacagaatctgcctgttcatcaaaggaggccagacaggaggtgaga
aaaaccaggtgtgtcccacaccagtctcaatgaagccttttggggtgtcttgtgctcttg
actaaatctcagatggtactgaatgaataatcaccaaaggcgtgagctgttaaggaatcc
cagtttggctggctctgtgcagtcagatgtagccagccctgtttatgtgtgaaaggattg
ggttttccccaagctgtttggtaatgttgcaagaacagactttcccctccctggctccct
ggagtaaaatggctgccaaagtattttggaacagaaacttagaaatgtaccgaccactag
aagagagtaacaagggtcctttgatattttccgtgttcactatgatcaagctggcatcgt
ttccttctgagctaaagattctgagctatcattggctgatgtgagcttgtgacctagcta
cttctgttcacaatacactgtggaggggcagcgggggcagccctatttgggttgagagtc
tttaaggagagctttacagatgagttctagtgaagcccatcagggagaagaaaatcaaac
acaatgggaaatgtttaacaattaaaaccaggctttgcctgtgtggtcctgtgttttacc
acatcactctatggaaatgggctgttggaaggaagactgtatttctgacagtttgcagag
ccaaaaacctgttgaaggctttttgtaaggtagtggagaaaatggcaaaacctttaaaac
ttaagggaaattacttgatagttctgatgaccacaggccaccagactgctgggtcatgga
attatagctacatgacaaagaaaataggagggtgggctgagccagactcagaaactattc
caaaagtactatgactttttaggaagctagttctttttatttgaaatattttgtgttttt
ttgcatgagaattagcctatgcttcttaaaaatatcataaaatgtcagctagtagaaaaa
taaagagtttaatctccactccgactacctagagtcaacccttgttcatactgcagtaca
tttttttcttttagttctgttctatgctttaaataaaaatacaattaggtccatatggca
atataattttgactccttttaaaactgtagcttatatcataagtctatttgatgttgttt
tgaagttgtcatgtacattttgtcatacaagtttttaatgactgtttttatggggttgtg
ccccaagttacttattcattcccatgttatcagatattttgttctttagctttttttttt
tttttttttacattataactaatgaggcaatgtgtcttgagtattttgaattaactctct
agaatcgattcttggggaggttatttactttgaagtgatggacagagtgtaggagattta
tgagtgaactcttgtctgatttggaaatatagagttgtttaggctaggtattaccaaccc
aaagttgacacttgagtcacctaagttcttctctactccagagacttggccctgcctggc
ctgatcccaggaaaagagattttagggattacagaaatgggaacaagttgtgggtctgag
cacagcatgcaaattaattcaacacagcccctgggacaggcccatgatcagtgagctgaa
actcccccttcaagtgctttcatgattagactccagcctaggaagcttgtctattagttg
tgtaatcttgaaaaaatctctgacacttttccctctgactcagtttccccatctggcacc
caatcttttacagtgttatgaaaaatagggaaaatgtagaaaggaagaacatggcaccca
atccttaatggacactcagtgaaagctggctatcatcatcatttttggggttgttgtgtt
ctacaaatgtattttcccaggagttttttttactctgtctcctctttccttcatataccc
ccagcctgtggctggggtcttgcttcaaccaccatgcacctttctgaaacccaagtttta
ctccctgataaaggtattgacctcttgttggtctcatcctccagacctacctatacttaa
gaaaatgacatctctttaaacTGGTCCCCAGTTCACTTGTT
Primer
(+)cttttgggtttccccattgt
(+)aacaagtgaactggggacca


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.