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Mouse element [ mm1517 ]


Position: chr1:184,911,995-184,914,445 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Tlr5 - 1700056E22Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTCTGTAAGTTGGCCACCTggctctctgggctcctgagtctgcctcgtgcttccctggt
caggacatatatgcttagtccctgagatgaatctctgtaatacccctggaaatctgacaa
taaagccactaagctattcttagaactacagtaaaatagacaagcctccgcactgagagc
ctttggcctctcttgttatcctcgttctgaacaggaggaagctctcagaaacttttctgg
ggctagcagtgatggaggaccgtagccctccaccctagcccatgacagcatcttgccaaa
gccactatggagggaaggaaccagcctttattaggctcctctctgccaggctctatgcta
ggaagctcacatacataatctcactaaagtcacatgactagatcagggatggtggacagc
accccattccagagaggatgagactgaggcccagaagcccgagccgcttccggtggatga
tacaatcctcagctcctggtgggctctttctggggaaagtctccttgctgggctgtgagt
ccttggatccttcctcgctctcagcgtgttagggctccatcctaggaaagcgccattctc
ctcagatctcagaggtctcaagattccccctgccactctggcctgtcgccctttctcact
gacctatcaggatcccattgaggacgactaggctgtgacctccaggcatccaacatcttg
atgacgagaatgtggggtctaacatctgacctgttctaagacacgggaagcagggccggg
gaagccacacactgaaggtcttgattcccgtaaagcttgccaagatatcacttgcaccgg
agtttgtgtggacacttggaatactacccgtgtattctaactaccgttccatatagaaac
ctaagggatacttgcaacaacaaatccagtcaccttgaaaaagagagagctttaaaaaga
gagagcccagactagctgcgaatgaccctgaacttctcatcttcctgcctgcatctgcca
gacgccaggattgcaggcatttgacaccatgcctgctctttgcaatgctgnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcttccgaggccggtcctgagcatgtgaag
catccagcaggggggcactggggagacgctccggagagtgagcagccttgctcaatatcg
ccttcccacccttctgcccctccatcaccaccgcccttgctgtgaaggttgtgtgactca
ttagcgcagtcacgtgtctgagcggctccagagcatgctggagggttgccctgctggtgc
gtctgcagatagcctgctctttgtctgctactccctgtctcctttctgcctgccgtggtc
agcacagccgtttctgccacttgtgggcaatgtttgtgagggaaggaaagaggcaaggag
ggagagctatcacgaactgcggcgaaagggagggtggaggtcagggtaatcaccaaaatc
ggttccgagctaatcctttaaatttggtcctaagaacaaggagatgccattgaacggtgg
caagctgaggggacactacccgatgagtattttgaagacataatccctctgcagttaagg
aggataggcttcgtgatagtacacagaacggaggattttacttaatcgaattgtgttagg
aactcaggcagctagagatgaggacaaggaaaacaaggtcccagcaagagctctgagctg
gcccgaggttagggagccatggctgagcacaggactaggatagtgcgctcgggttacaga
gtgaagccagaagttacaaagggaccacagttggtggagggcataggatgtcatccgtgt
gaagaatgtggagtgtgtaccttggcttctactgcctgcctgtggcattggcatcctgtg
agaactgacctcgtgggtctcacgcgggtcagtaagggaactcacagggtcgcctctgtt
gcacctacacacagtgtactgctatctgtggctgctgttgccaaatcaaggggctactgc
gtggccaggagggcaggtgggtggagctaggagacaggaggagctgggggaacaccgacc
ttctgtgaggagctctggacctcttacctgaaggtggtgagaagtcactgagaaattaag
acatttgaccaaagtgaggagatttcaagctaagcaaaaaaacaggaggggtccaagctg
agccacaggaagctagagcctgtgactgagcacagagtgggctgtggaaagtgatgactg
ggaatcagaggcccccatccgagagaagctatggacttctgcccgtaagggatgaggctg
ctgctatagagaacttgaggagccttagggaTCAAGGGAGAGATGGGAGCT
Primer
(+)gctctgtaagttggccacct
(+)agctcccatctctcccttga


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.