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Mouse element [ mm1508 ]


Position: chr10:90,642,463-90,646,496 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Tmpo - Mir135a-2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAGCCTGGTCTACACAGAGagttagttccaagatagccagagccacagtgtgatcctgt
ctcaaacaaacaaacaaacaagcaagcaagcaagcaaacaaaagtagtcaggtacataca
ttgccaagttagctttgtcaattccacaaagcctagaatcatctgagaggagagtctcac
ccagtgaggaactgcctgaatcacactagcctatggaactggctgggatgaactaccttg
gtaagggattgagggcagcccaggcccactgttggtggttccattccctaggcaggtggt
cctgggctgtgtaagaaatctaagcatgaacctgaggactccagcaagcagcgtttctct
gtagttttgcttcaagttcctcccttgagttcctgccctgattttccccaatcactgact
gtaagttgtaagttgaaataaaccctttccttccccaaattgctttcagtcagagcgttt
tattacagcaacacaaccacaacagaaaacagaacactgctactttatggcctagatggt
attttgctattctgggctttattcagtcctcttaacttgtatggtaaaccagacctccag
ctttatcttctcttattctcagggtgcagtccagaaaaagtccaggccatgttttatgtt
ctttgtgatctggtcaaagtcgtgaatcaaagccttgaattctggtaagagctctgcatt
tccctcagaatgaatcagaaggacacaaggtcctgtctgacctgcctctcatttacctcc
ccagccctttccctttctctgtagaagtaggcaacactgttttcattagagggtggctgc
cttcttgttctagctgagcaactttctgcgcgcacgtcctagacctgtccaaaagcacgc
cgccagtcagactgcattaggattccatctaataacctcagtttgacttaatcaactctg
taaaagccctgtctcctaacggccacactcccagttagaagatggggatgggcgtgggtc
agggctccaataccaagtttttgaatatacaattcagtgtttaacctttctcccattttg
cacctagagtcacaatatttctttatcttagcttaaaccggacatatttcatttgaacaa
aaatctcacctttttgatgcagatagaatcacctcgtgacgtgctatcttgacccagggc
agagctgttctctgttctgtaactccattccaatttatgtttctctcaccgcacttacgc
caacatttggcacccagtggcttaaaatataactgttttctgctgctcaaaaccggtttt
ataaattgtatgggaccttgttttcaaaaggcaaataaggtttttttgtgtgtattaaag
tctgtaccccaactattgtatgattgctatgaaaaatcacaacgggttcagaagcctaag
gcagagcagaaagaccagttctgaaggcattgtgtacacacacacacaaaacaaaccact
tcactttacaaggcctaaagctagccttcagacgctacaatgtttggtaagccttatttt
tcagcaattaaagtagtacggtaacttttgaaggaagctttagagcacgaaaagcatttt
ttaaaagtggcgggaacacatctcggttcacattagactagtgaatttaaaaagaaaaaa
aatacgaaaaactatgaccccgacgtgattcgaacacgcagccttctgatctggagtcag
acgcgctaccgttgcgccacgaggtcctgctgggctctgcctcgcgcggtttcttaggag
tccgaaaacatggcggttaaaggctgcctgctgcacctatttcctgcctgtcactcggga
gctggcgtaaccggagcgggttcactccgcacccgactgtcgctctccgtctaggttggg
aggtaacctgcggaggcgggagactagttcccgtctaagccgctcagccgagtcgaagga
aacccgctcttcctcgcctttccggcagccacttccgctccgttcgtcccgcccccgccc
gttaggggcggagacgccctctcccctcccccacgcgatctgcgcgccgagctggcgacc
tccctttgtaatctggcgggattccactgcgcacgcgcgggcccgtgccaaatggcgctc
gaatcaccagggtttgtccccgccaagcgtccgcgctgccagagccaaaagcactaggcg
ttttctctcgaagagacaagttttcgtctcacagggggcgttgaaacgtaaaagaaatcg
ttttgaaaaagacgcaggttttagtttacaaaggattcctgaccacttttgacagagata
gcaagtcgtggataccagccgacagcaaaaattcacaacctccccgtcggggaattgaac
cccggtctcccgcgtgacaggcggggatactaaccactatactaacgaggagctgtgggg
gaagagctcttccaggtattagataaggtttctctcccctcccccatgggttccaagttc
tcggggattgaggattcaaaattggacttcttggaatgggctgttgtatgtctctggttc
tgtctctgtagaacaaactacacttccaagtcaacgttaatgaactacgtgaaaatatct
tagcagaactctaagctttccaaatgtttcagtcttttgtgtttgagttgatcgtgacaa
agggcaaaagaattgagatcctcacacattcgtcttaagttggagctcaagtgaaggtgc
cagctctctagtgcggtcagagatgttccgaaactctgagtgccttcaaaggattcgtca
gcgttcatgacacaaaaggatctgtgctcttgaatttactgaccgcttcacttttcttat
atccccgtctacaacttaaaaaaagaacagaagcaagctttaaatggctaatactgcatt
taaagaatttaaagagaaaagatgtgccatctattaacgtagagctgtggaaaatacagc
aacagaaccaacaggaacacacgtgatatactaagccatttcatgaataggatgaataag
atcgagctattcccccccaccaccaccacctccgggaggaacaaggacaacaaacgtttt
aactttgtcaccaagagcatttacacagccataggtaaacacacatgggtgacaaggatt
caggagatacttggaacgtacaatgtaccagacattgtattagatgccctgggagacctt
atgttatgttatagtaggagccagctagccagttccaatatcagtattagaactttcact
cgtgtatctcaaggggtcctattcttgcagtgtgttaagaactattgcatttttatagat
cgtaagttacatagtaatctaaaaaacatcgggtgccagggttatttaatatagacagaa
atgataatttcaggggtatgttttggccttttttccttccacctctaactctattaaatt
tcctccaaaaattgcttcctccccccctcccccccatcctgtagcttctgtccacttctt
aatctccaataacacttctgaggtccaaaaggccccgtggtaactatggtgatgcccttt
tctgggagagttttaaaggacttgccctaggtcttttagttggcagagctacagggaagc
tggaacccaggtcagatgaatcacctgtttgccctgctctgtatatgggagaagaggcac
ccactgcctgctttcaccctgtctctgccaaagctatgcctgtgttccgacacatatgtt
actgcttactccctggggcctgctaagcaggagcctgagtcagctcggatcagagagcat
gcaactcaccacctgctgtctctcttcctaaaatggaaagggaaagctggtaattattaa
cctgaacagggtgtgggagattccttactgtcagcattgggagaaggcgcaggttacaaa
tgccaactggcaggacagaggacactcagtgctctgtgcgggcagatagcataaTGGCAC
TTGATTCTGGAAGC
Primer
(+)CCAGCCTGGTCTACACAGAG
(+)GCTTCCAGAATCAAGTGCCA


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