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Human element [ hs1505 ]


Position: chr12:14,410,263-14,414,344 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: GRIN2B - ATF7IP

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTACTGCACCAAAGCCCTTCagtctttgatgggaaatttaaagttattcccatccagagt
gaaaattaaagttatttctaggttaggatgcgagccaagattttaagggcaccatgtcaa
ctggttagataacaactttgaggaaagcagaacttaatgtaataaaagcagaaggtttac
aatctaaatccacttttttattaaagaatttaatctgctttatggggtcttggcccaggg
aagggtaaaaaaaaaatgccaaactggagaggccgggggaggggaatggctgtagatgac
tctgggaaaacaggagggagggaaactgaagcgcgaatgaggccggatccgccctaacaa
agaggcagaaactgtgtctcaacagccaccaaatccagttcagggcggtttgagccagtt
tctgagctggattgagaacaacagcctcggcagagacttcactagggtgaaagagaaaat
ccagcatggacttcgcagaaagaactggatttggcctggactcgctggagcctaaagctg
ctgccagtagtggcaaagtcagatgaaatataaggcctggagcgtggacagtggcctctt
ccagaaagagaaatcacacagcactgtctctgtgccataatccagtccgcattttctgtc
ttgctgctcctaattgtggctggtaagggaaaaagggcctcagggtatcagttttcagag
aaagctgtctgcaatgttgggggaggggaggattatgtgtctcctgtagtttcatgtgtg
tgcctggtggtgggggggggaatgtgcgagagggtctgaaggagagggaacagcacttca
caccctgcagttcacaccacctttccaacagctttgctgtattgcacaacctcaaaatac
actgaacataggcgttgtgggagcgccccacatacaagtggcacttgtacaagtcattat
cggacctccttcagccctatgcatgaaatggcagtacccatacccaatactgtcaacatt
ctcttttcatctgcgtccagaaatacatacaagccgtacatgcctttctcaactaagaga
cacagcagtattaggtaacaatggaatgataatcctgtcctccgctcccctcccccaagt
gccagaacctcctaagatctgatcagtcccaccctgaaatggctcctctaacactgtcta
gtagactgaactgtggtctgcagctgtggaggctgtgcactgcctgtggccaagtttggc
tcagaaccttcccgaaccagtacagcccttccccaccaaaaattcctaggagttgtacac
aaagtccaggtcggcctggtgggacactgtgtgtgtgtgtaaattccctctcccctaagt
gtccaaagatgtttagaatcttccagaggcactaaatgcctccagacccagggcttctct
gactgaagtcagccctggtgcgagctggggggcagggcatggagcttacgactctcccat
gcacaggctcaattataagcagggctgtaggtttcagaaatattcctaagagactgggga
agggaaaaggaagaagatcagctgaaagatgtgaaaatgctattttattccttttaccat
ggatacatagatggaaaattggaacacaatccactctacattattaatgtgcgaaaatca
aacacacgaaacatgttgctgacattttctatttaatgtttattacacaaataagtaact
catgaagctcttctacgtccatttcattaactattagatctggactgctggggattctga
taggtcttttctttctttaggatttgtttcttttttggtagggaacaatgaattgcccca
catgaagatgcagtaggctggagaggataacagtaataaccgctgggtgtggtggctcac
gcctgtaatcccagcactttgggaggccgaggggggcagactgcctgaggtcaggagttt
gagaccagtctggccaaaatggtgaaaccccgtctctactaaaaaaaaacacacaaaaac
tagctgggcgtcgtggtgtgcgcctgtaatcgcagctactcgggaggctgaggcagggga
attgcttgaaccagggaggcagaggttgcagtgagccgagatgccaccactgcactccat
cctgggcgacagagtgaaactctgtctcaaaaaataaataaataaataaattttaaaaaa
cagtaataaccataatactgagaactcactataaaccaggcagtaccaagtgtttcctat
cttaaattataacatacacaccgtacatttccaagttaggaattattgtccccattttag
agatgaggaaaatgaagtttggaatgattcggtactttaccaacgttacacatctataat
gtggcaggtaaagattctggctccaaaatccatacatttaagctgatactatacccgcca
cctcactggcaacggattataaaccctttttcagatcctactacgtgtcagcctacttcc
ggctgggggaagatggtcatagcgagaggggaagaattggttcagtgatgagaacatggt
tggttcctgccttcaacaagctttcaatctaatgcctgtttttttcaaggacaattcaga
acggtctgacaagggatttttttttttctgcctttcgcccccagaggcactctgggaaaa
agagtttagaatttccctgccatttccgtgctgtgcggggaggaacacttgaaatcgggc
ctggcggggtaccaggaggcagcacaagcaggcggggtggagaggggcagggcgaggccc
cgggagccgtcaccatggcaacccagtctgctttccagaacaatgtctctaaccaggaaa
acagctccagagagctcgctcttcataatccccgtggcctgtcgggttagggaatgcaca
aaggggagtctttctccatagagaaatgactctttacaaggcggggaacaaaggggaaac
atttgttgtataggatctttctttgttatctggctgaaataaaatcaacaaagtgcaatt
acttagttcctctccactcttcacaggaaatgaacgctgcattgttaggcaaggttcctt
tttgtgaataatatttgctgtaatttttcttttatccccattttatagatgagagattag
taagcatgaatgaacttgacctctgcaaaactgtaatttgagaaccagggcgtcttttag
aaggctttgtgaaggaggccctgcctttgccgactttgtgataaacctaccagataatgt
gaggagggttggtgtccacgtgctcggggccttgggagccaccagcgctggctggactca
gccgctgcgctctgctccctgcgctcgcccctcccccgcacccgcaaatgcagccaggag
gaagaggcgaggaggaatgcaggaggcattccagccccacccccgcaagcctcctccagc
gagttccgaaactactgctaagtgggctgcaaggaagacagtgaaccagctggtgactgt
actcctccaggctttcacatgatctacagcctgactacacccagcgcattgaaggttgtc
ccttgctctctctgagctagggtgtgacagcccttaaagatgagggtaacatcgcggtag
tcagtccaggcctgcaagaccaggaacaacagcagttactgtatgcctaataaccgacga
ttttccatcagtgtccacacttacaaataatgtcattttttaatagttatataaaccaga
aaggttaagagttcggctacctcgtggcaataaaagtcctgctctctgtgtctgggtgtc
cccgaggagcccaatccatgacaaaatcggaaaagccagaactagacctacacctctgca
gcagtccctttgtgcagtgatggaggagagagggtccctcattactggagaagtcatggg
tcgcacactttccagtctacgctagagattttgttgccctaaggtcacttggtgacagga
aatgcagtccctgcccatcccccacccccagggactaagttaAGAACCACTGCCAGAGAA
CC
Primer
(+)GTACTGCACCAAAGCCCTTC
(+)GGTTCTCTGGCAGTGGTTCT


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