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Mouse element [ mm1501 ]


Position: chr13:84,484,156-84,489,715 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Tmem161b - Ccnh

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTAAGAACCAGGCAGGCAAagagagagggaccccagggaaaaaggaacaagagactccc
agattatgtatttattttatgtaaagaaacgttacatatgtaattttagattttcttcca
aattagagttctgaggctttagaaaacctatttttaacaccttcttctctcctacggtct
tgattgcctaaattgcttctaattgggtggcacacattactgaaaacgaaggacgcatga
caagcagccttcattcttacgcagatttagataatgtgttcaaatgaatatcttttctga
taagaaactagaacaacagtaaccgtagcagttttcttctgggcttgagcagtaggtgga
caatcatacagtcctgcgaacccacacattttagagggtgtgcctacggtatgcagtact
agtgtgcttccacctctaatgtagcacacaaagggaacatacttgtgttctggttggttt
tcaaacagcttttcatcctcttcagcaagcataaatgtttttatttttgttgttgggttt
tttttttctttttagtttctttttatttgtaagccacttaaaaatatgtatgttatcctt
ttgctcaaggctttggcggggccctgagagctgttgatgcgggcgtgctagctcccgaca
gcagcgagcaaagttcattgccatactgaggggagcttagcttttcactaagttagtcca
gctgctggggtgttctgggggcgagagtttcttggaccactgacaggtgtgatcctaact
tgagtttggctgagggcaagtgtcagggctgagggctgtttgtctgtaagatgcttatgc
gggctaggagctggattaccttgcaggctgagggatccccgaagttctttgaaactggta
tgtacctaccattgaacaaagggcaaatgaaaactcatcttactgtctggccaaactgca
ccttcattgtttcatcttctctgaaataaggctggcagcggattataaataaagttattc
tttttcttttcttttttctttttcttttctctcttttttttttttttaggccagaggaaa
ttcgctgagagtcaatctcctttcggcactgttattttattttacttttcccgacattct
ttgagactccctctccctcaaaggcatggagaagcactttcaggctactttaaatggtgt
cacgggagaaagtcctaggtgaggcaagagcactttgggggaatggatctgtggattgat
ccatcgatgggaaccctctcctgggctgccgcctgcggagctgggctgggcagcggcctg
ggaggtgaggggtcagttccacagtctgttgtgcgcacgctctacccacgctgtacccac
actgtacccatcaacataaggaaacctcgatgtttgcgaaagcttatgttcctgcataaa
ggcccaccaccagataccttcgcagtttgctctgccccttagaatgcgttatttgacccg
taaaagaagatttaggctgagattctctgtggtggtggtcccagacggtcccagcatcag
acgtgcgcctcgctcctgttcaccccacactaacgaaaatttcaggctgtctttggaaga
tctcttcctgtgcactcgtccctctactcgtcccttgacaggaaagaggtggcccaaaga
agcgtttatcccgaatgaagagtgtggggatcgagagggtcgggaatcaggagatttgta
gagtgtcagtaagctccctcggatgtaggcaaagctttccctaggagttgttaaaaagct
gcgctgagggggcggggtgcggacaacctcaacgcttctacttaagaaatgtaactgagg
gttcaaactcggtctttgggactgcaaaaaacaaacaaacaaaaaggctcccacagttgt
taggacaggaaatcgttagtaaaacagtgtcaggtggagactgtgacagtcactccaaga
actccagaaaggggctttctatgcctttcctttttagaaagagaaagagaaaaaagaaag
gactggagagaagacagacaggggggagagggagagcgcagaggagaaaggaagaagagg
gggtatttagcaagttaagaggttaaatatttgaacagattcgtaaatatatagacagcc
cttgcaatttgggatgtgtaataatgccttttgtggtgctgtctggctgggagggtaagc
agaggaccctcctgccacctttttcactgggaaaccaactggaaagctcctgggttcaca
aaacaaaatcagttcccctcttttggaggaagagaaaaatgctgtctctactagcattca
tactattatttaaaaataataataataaaaaaacaagagaaagcaaatgaacatctaatt
tcttagggatttttttttttttttcagtttagaaagctatcttcaggctgaagtcatttc
gaagtattgtttgagcgaatatgctacagcactcaattatctaagatgcatcaattattt
ttttgaccacttttgtaacaagaatgtattgatctgggtcttagaaacccttggcactct
gacatgtttcatagttgccgaatagggtgggtttcttcttccgacaattgtactgagcgc
tgctgatggaatctgtcctctgcctgtgcccatgggcagaggacacaggctgtgggtgtg
tcccgcccacagatgctcgcgcgcgcgtgtgtctgtgtatgcattgtacacacgtattct
ccactgtgtgccccaactggagccattttcctcctttcagtgccctgcgtgtattagtaa
tatgcaagtagaatcattttgcttgagtatattttggagggggaggggataaaccattta
attctgctctagtatttcctctgcaaaattttcactgcgtgtgaattcgcgtgaatgcct
tttctgaggtgtgtgttatgtgtgtgtgcttgtgtgttggggaagatcattggctcatca
gcgggtgtgtgcctctgcgtgtgggaagcatgcagactctgaggaccttgggagcagccc
acgttctctccgggtgccctgtctgtatctgcccttgtgttttgtgttcttgatgtgatt
atgtgcgttatttacatatgtgcttctattcttttgccttcgtgtagtgcctttctctac
agtccacacatttcacatatattcttttatcttttggcaaagtgccttttttgttcctcg
aagaatatttattgatgtgataatctgaaatgaaaagtggtctcccatgaaggagatgga
agagaaaggagcgttcatctttcttaatagacggggcagtgccagttgactggatcacag
ggtttctctgcactttctgcgtgagtctgcgcgtgggggtgggggcggggacggctgaag
gaggacggaaaaagaccttttaagcagaacaaagataggacatcgcgcctccttgcgtcc
tgattgcatactgcatctacccggcggtcccgactttagaaatcagaattcagagatttt
ctccttaaaccattcagaggccgcctctcagacccagccctcggacctcagccaatcacc
ggacgccatgcaaatcacctctttcgccctccaaaccgaggtccagtttaaaggcagttt
ctgccgccccgcccatcttagtccttcccttcccccttcctcctccgcctcccacacagc
agctgcttgggaagagggcagtgctgggtgcttcatgcatatgcagacagatctatcctc
cccctccaccccatcctctctccctctcctcccgcccatctttgcctcgctccccagccc
ccaccctgccgcccactagtatctccaagtctcctcgacgtatagttcccagctctggta
catgcagctgctacccacaagtatgcccaggcgctccataggagccagagagggagaggg
aggaaacctctgcttttgaaatccgctcgaaggtcaagtttgtggtttacggagcgggag
cccgagacactgaaaatgctgttgagtctgcaagaagacggtgcatgcaggaagatggtt
ttgccttggttttcttccactaaacagcagattaatttctctgaaacacacaaagtaccg
gtcatgtttaaaggcagggtgatgatagatggttccgcgtgcgcacagttacagagcata
tttgtcttgcacatcaaggttccttaagccacaaagcactggagaggagatcaaagggtg
ttatatcttcttaggagcaggaaggttgggaagtgcggctagcagtacgaccagtggcgc
tggacctgcttgaggtgggaagttaaatggtaggtacggaaacatgacctgggacctacg
gaaaggaaaaataattctgtgagaaggcgaatttgctagtattatgcatacgcagactgt
gaccaaggctcttccaagccgccctaaacattttcaagttttgaataacgcactgaactg
acctggattcctttaaaagttggggaaaataccgtcgcgaaaaccgcgcttttagagtgc
ttggagatcctcttaggaggaaccggaactgtggcgtgaccttgttttatagatctactt
ctgccctgaaataccttcaggactttctagaggaaattgcagcaggttccccttaaatct
tactcggtggacaagtgagggcttagcaaatttaaacacgcactttgctaagattattta
ccgaacacttttttttttttttttttttttgaatcgagggcgttttgtgtgccgagaaca
gagcaatatcttccaggcaaagcgcttcacgtggctggcagttcccaggtgccacggaaa
ttaggaaaagaaacagcaagcagctcagaacggtttctgcccttgagctgctcctgctct
agctggagggaaatatgtaggtggtgcttcccagcccaacaggaaacagttcagagagct
cttagactgcagtgaaccggcggcgagttggtacattcctatagtgaaacagggcagcaa
ttaagagtgaatggacgatcttgaaggcagtgttggatgaaaaagcaaatcacaagagaa
tgtgatattaatgcaatgttaatgtctattaacataacactgtaacagactacaaaaaca
cagaagttgcatgataggaggcataaaatcgtgtcagggaatgggtgtggaaactggagg
aaggagaggacatgttttagtcataaagattcgagctctgagtaatgcttattcctttta
aagagctagaatatgaggaaacatactcatgggaaggctttatggaaaagctggcgctga
tgctaaatttaaaatcttgaatatgataagcagaaggaatcagaatactcagaagacaat
tttcctgaatgggggaaagaaaagtgtagcccatgagaagcttttatagtcttgaattaa
aatttcaatctacatacagtgaaagccgctctttaagggtgctgaattctgtaagcttta
tggattcacagtcctggaagCAGGAAACAACAGCTCCCCA
Primer
(+)cctaagaaccaggcaggcaa
(+)tggggagctgttgtttcctg


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