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Mouse element [ mm1479 ]


Position: chr17:29,491,795-29,494,823 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Mtch1 - Fgd2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAACAAGGAGCCTGGGGATGcagcgctgtacatcgagggcttgcctaacatacacaaagc
caatacccccagaagcacagaggtcaggtgtgctggtgcacacctgcaatcccggcactt
gtcaggtggagacaggatgatttgaagttcaagatcatctttaggtgttcagtgagtttg
agacaaaggctaggagaccctgtctcatagaccaaaatcaccgaaggtaaatggctaagc
tcagccttccattcggagagttgactgagccctttgtgattctgctgtgggactcagccg
tgaaatactcgagggtcaggggattgataccgtctttggctatttggttaaaaagtcacc
tgtgtgtttctgtgactgcccaccccaaccctaggttggaggtaggaagtggaagaaagc
aaaccttgggtcctttttctgggagatctgtggtgcctctgctgcttgtcggcaggctct
gtcctagcctctggagacagggagaaatgagccatgtccaccctctcaggattttatgag
gactgaattcacaggtgtgtgcccttttgtaagtttgccaagtccctagtgatgataaag
cccagggcctcccgcaagtgaggcgagctctgtacccctgagccatctcctccagaaacg
gcttttggagtctcgtgagcttgcttatgtaacagctctccctaaaggccctcacacagg
cacttagtaacaaggaaaggacaagagggccaggctgtgggaaggctctctgcttactat
tattgcctgtgaagcccagcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tacatgcacagcctgggaagggagaatgaagcagggagtgtggaggggtgcaccctggga
agggggtgggtagctgggggagaaagcaacaatggtcagaatagctggacaggcaggaac
aagaggcccttttgtcacttggaagcctggccactcctctccaagccatttcttcttgag
ctgttaaggctaaagcagtcagggccttgaaatatagagaaacccaagagaggcctggag
ggcccaagtgctggccctgtgtggagctggactttctcaaggcactgcctggaccctccc
ctgggatcccatctggtgccgccttcttctgacccgttttttccgcggaaaagcaaccct
ccttccctgcttttactaggctcggagacagactgcggctccatattgtctctgtcaggc
tggccccgctactttccccaggcccaggcctggcacccagccagcccaggcgccacctct
tatgaccttgagtccttcctaaggacctggcaacagccacaccaggtgccagccaactct
cagctttgaaactggatagttaacgcggggaagattaaaaggctgttttctgtggcccgc
tgatgctgacgcgctccgggtgtcaagtcaggcccacccacgtactttgcggtcatcctg
gctctgtgtccttgcagaaactagagtgggtcctccaccaagccacagtcctggctcaaa
ggctttccccgtcactgtcctcacacagctgcctaaccaatgatgacattgctcagatta
actgtaaaagacaggcacactcgggcctctcagcagccagaacataggccagttcctagg
aaaggcgacatcaggaagggtagagggaccttttggcctgctgagggggacacccatctg
caagcccttccgcaggaaagcatgagcaaatggtggggcttctggcaaagaaacaagagc
ccggctgtcgtggggaggggcgggcagggtgagcttcagacagacttattggctaggctg
agattttccccgcccctcttcctccctgtacagccagggactggtcgcctgggcgtgcac
ctgcccactggcaacggtcacaagtggtcctctgcccacacgtgattgatcaaccaagct
cccccagccccccagggcctcccaaagactaggaggtgaggccttagggggtaacaatgg
agctgaagccaaagagagcttgctggagatgtcgaccatcctccctggcttgcctgtcgt
tttgcaggtgcggtgtgaggttgacagctggattaggacagaagaggggacaccctgggg
aggcagatgccttctctggaagctcacggcctgaggcagtctttctgcactgagggagtg
atgactgttcattctataccataggcttctggggtgggggaggggcgggggggcaacgag
gtacagggctgggaacatccgtgcccaagccccgtcgcacaatgctgaggcagaggctga
accctaacaaagaggggtctcccaagacctggagtactcagaggaagtacccttaaggat
caaagtgacccagactcttcaatttgtgacaaaaatgctgtcacatcccaaggcagggga
ttgtctgaggggaatcccccacgccccccccacacacacacacacactgtgaggcaggcc
aactcaggaacaaggcatggcatggccgtggaacagacttgtacctgggtgttctattat
tggtttttggagataggctctcatgtagcccaggctggcctcaactcactatgtagccaa
ggatgaccttgaacccctgatcctcccacctcacctcccaagtactaggattaccggaat
atatgtgacccactgagcttaacttaattagcgttgcttgtgtgagcatgagcgagagct
cactggatgatgggcagcttgtcactggctacattgttaaagaaagtgacactctctccc
ttagtgaccatcagctgcagggagtatgtcggagaacagcaaaaatgccttttacaaaaa
catatatgtggctgtgtacatatgcatgtatgtatgcatgcgtacatattccatggtatt
caggtggcagtcaaaggacaacattcaggaatcaattctctccttctatcacgtgggttc
tgggtatggAACTCAAGGTGTCAGGCTGG
Primer
(+)aaacaaggagcctggggatg
(+)ccagcctgacaccttgagtt


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