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Mouse element [ mm1477 ]


Position: chr13:51,407,755-51,412,103 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nxnl2 - S1pr3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATGCTGTTGAAAACACGGGCgtgaagtggggcttttccactcctggcctccctggaagtt
cagtaggaagggccatcagccagttctgtgggacatggggtcacactatcctctctacaa
cctctcaggaaaaaaaaaaatccaaagaacaaataatgctgggtcggagagacagcttgg
tcagtaaaaggacacaaggacccaaggttggtccccagaacttacttagaacaaatcaat
aaaagttgggtatggtagcctgcccttgtaatgccaggactgaggacataattgacaggt
ctctgcagttggctggtcagccagcctttgtctgcttggtgaatcccaggccactgagag
accaggctttccaccccaccaaagggtatggcatctgaaaagtgacacctgaggatgttc
tctaacctccacacatatgcacgcgcgcgtgcacacacacacacacacacacacacacac
acacgcgtgcacacacacacgcatacacacatacgtgcacacacatatgtacacacatat
acatgcaaatacatacatataacacatacacatatactcacaaatgcacgcacacacata
catgtacacacacacacatacacactgagagaagtctgagcaaggtctgtctattacctt
gttccaatgtttattgcaatatttcagagcagagacttgatgcagtatcaaaggtttaca
tccactcttttggaatgctcacaaaagcacgttcgggttgtctcctgaatgaaggaatag
gaaaagggcaaggggaaaacacacacacacacacacacacacacacacacacacacatca
gcctaataaatcaatgcaagatagagcagctgcagcaatgctgagttattttgaataatc
ctctggctcccaggactctcttctgctcatctagcttgagatccatctgcatcccactag
agatggtgtttgtattttcagactgtcccttgacttagagccatcaggccagagcctcag
cctgctcttaggaaccttatgaacccttggtgggagtattaaagttatttaagtccccat
gtctcactctgaaggctcagtttgtgttttgtttgtcctcagtctatctgagtcagaggt
gagatgtggtgccctctcccccaggacttgtgtgggtggctggctggtcaatcttgagtt
gggcaggccgtcctgggaaccttctcccacccgctgagctcagaagctaaagcagggaca
gctggcttcagagggcctccagctggcccttctcatagagtgcagctcatctggcctttg
atgccactgagctgtgccaggtacagggaacacactcagcctgcacagggtgtgtctgat
tccctcgccaccattacagcagtgtcctgcttgggctcctgccacccaggagaacagcca
gggccagctctctatgcctcttttggagcagccttgccttgaggtcacaggggcaacagc
accccctccctacacacacacacacacacacacacacacacacacacacacacactgaat
gaatgactgactgactgagaaagaacatcccaaagactctgcctcacttctggtcttaca
cctctctacaaggctggcttatgtgccaaccagttctctccaaatgacaggaccatttta
aaccaattcctgtaaggcaccctactgtaccttaattttttttaaaacatcttttcatct
ccggaattatttttgactgaaagacatacacagcaataggacctataattttctttagtt
aacaagataacaaactccatgaaaacactaggcgatggtcacgtagggcttttcctacct
gaagccccctggttcccccacacacacagagcattgtctcctcactagctctgaggacag
agcttctaggtccaccaaatgactcagtcatcctatttaaacagtcccccattctgatga
cactctctggggtccccatgagcacattcccctacaatatgggtcaggtttttatatttg
gatggaaatgggcagtgtcctgtttgcagcagggagtttgcagataggcagcccctaccc
ctttccaagttgattcattttccaagctacaaggaaatcccactgcatgctccccgcccc
tacggtttgttctctgtaaatgcggttttaattaggagcaatgaattctgcagactcatg
tctcaggcctttcccccaggcatccactgtcttcccgcccccatgctggccacagaatgc
accaggtcccaaggcaagctgcctgtcaggcctcctcaggcagcagctgcaactgattag
agctctgctgtgggccctgttttatttatgacccacctctcccttctcaaaaatccatca
gggcacactcatggaagtaaaattagaggcccggtcagggctggagttgggaaatgcact
ttacccttcttttcaggacattagtggctatggcagcgtgctgcagaggggacaggctgg
gggagtggccctgctgtagtccctgtgatcctcttgtgtgctaagcagggttgcttttag
acttccattgtctgctccgtgcctccttgaaagtcacactcttcccccaacctccttatg
acgctggctgtaccttaattgtcagaagatatctcagctctgctttctgccttccaactg
ggcttatctgcgcttggggatatctgttgttaataagccagttaaaagcctttgctcata
gccatattctgacattttttttttctaatggatgagactttttctcagtcatactgaaac
acaccacccccaccccagcacactcctcagaactttagcaatcctggcctgtcaccccag
agaagggggtgtctaaatcctttcatttctcagtggtctggcccagagctatcccccacc
cccagtctctctgattcttagataatgtgtcgccttgattcccagtatgatggcatataa
gatgaaacctcatttttttttttattcctctcaggagaaccacatttgtctttgagagtt
tttggctagcaattaaaacagaaagagctgcctggtcaagggctttgtgggaaagactgt
cttagctagagtgctctttcccatggtgactgggaacgcggtttctaatcaggactccct
ctcagacacgagtggtcctcactcacattcaagaggcttgtgtgtgcacacattcaaaca
gaaagacaggaagatttgctgcagcttagagaaatcgtgagggaggaaacttaggaggaa
ctgagaatgtttgggtgagccacgaggagacagaagagagaagcggagaaatgaggtggc
cttgttctccagcattgctgcgtcatctccaaagaacacggggcagttgctacctgctct
gaggaacgtgggtaactggaattatgatcactcaaatgcgacctttctgaagtcctcagt
tcgctcagggaagaagggggctgtgcactccacacagccaatcctcacggggcaggtgtc
ccagctggaagagaaagaggctcaggcctccacctcaggagggcaacagctaaacctgac
acatcacctacagcaccaaggcagggaaatgccagcagggtctctctctctcctctctct
ctctctctctctctctctctctctctctctctccctccctccctctccctccctccctct
ctctctctctctctctctctctctctctctccttcctctgttttttatatcccagttttt
ctgtgcatgctgttccctagacacactacaggaagttaaccaccaacatcgaggcatgat
ggttagtgttaacctgacagcatctagaatcacctgggcatggctcatgggattatctcc
atcactgactgaggtagggacatccagccactgagggtggcgtcattccctagtcagggg
catcctggactgtgtaaatggagaaaggcagctgagcagcagcatgcgtgcatcttaaat
gtccccactggtggactgtatcttggaactgtgagccaggacaaacccttccccttaagt
tgtatctgacagtgttttgtcatagcaacagctaaagagactaaggtgggggctggggag
gaagagcagtgtggaaaccagttctgcccaaggcttgtgtggcagtgggcctgggtgggg
ccttcccagaggctgacaaagggcttgactgacctcctgtctgctctgccttcccagccc
ttatctccttgactaacttctatgcacttactgacgactgacctccctggaggctcctga
gggtcagtgCTTGGGTCAGGTTAGGGCAG
Primer
(+)atgctgttgaaaacacgggc
(+)ctgccctaacctgacccaag


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