Human element [ hs1473 ]

Position: chr5:134,769,599-134,772,144 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: H2AFY - C5orf20

Timepoints:
e11.5

This element was cited in: Spielmann M, Brancati F, Krawitz PM, Robinson PN, Ibrahim DM, Franke M, Hecht J, Lohan S, Dathe K, Nardone AM, Ferrari P, Landi A, Wittler L, Timmermann B, Chan D, Mennen U, Klopocki E, Mundlos S. Homeotic Arm-to-Leg Transformation Associated with Genomic Rearrangements at the PITX1 Locus. Am J Hum Genet. 2012 Oct 5;91(4):629-35. doi:10.1016/j.ajhg.2012.08.014. Epub 2012 Sep 27.

Expression Pattern

limb (8 out of 9 embryos)

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 5

Embryo 6

Fasta sequence

GAGCACGGGTATGGATCATTtaaaaatcataaagctatttttaaaagaaggcagatttga
aaccctgggacactttttgcttcctggggagcgctacacagtccttctgctgggaagtcg
gcccatggcctccagccccatctgctgccctgaagatcccaaacattctcttgtgcagtt
gcttctgcaaaactaaggaggatttgtgccagtactcctgaccctgccggctcgcccacc
atcgccagtgatatgcatttgggccccttgacaaggaggccaatcagatagaatggagag
ggggacatatgtgtctcaccatggtggtgccggacataaggctgacaggaagtggtgtcc
agcaggggttcagatcctcctgaagggagggccatctcttcctgctcccgtagtgactgt
cgctgataggccacaggcagagaagcagaagctctctctcaaaggtcgccccatctggcc
ctggctcatcacattcctcagcgtaaagcaccctctgcccttgttctcgttgcagcaatc
ctatgagggttagggctagggggggctacagttattttccattttgtggaccatgaggct
gagactggggaaagtcagcctgcagaagggcacaagctgggcttcgtgtccaggactcca
tgactcccaagcccgagttcttacccctggatatttgcctctaaaggccacctccctgtc
cctcccatgtctggctgaggttgggagatgggggtcgtgactcagtctccggtgatgggc
tcagcctggcgagctgctcccagccagctgtgtggtcaggcaagtcattctcccagaaga
tgctgcagtttgtttgaccataaagtgggcagctcaatacttctcttcttctcacgccaa
gcccctcctccccgagcctgcaggaatctctggaaaaatgttctggaaaaacggaggcat
ttttacgactctctcctcacctaaacccgctgcgccaggacagagcccagaccctcgggc
tctaaccgttatcctacactttggacccgggcagcccctgcctttgatgttgtcttgcta
aatgtccccgagtcactggcgggctctgatctctccagcacctaataattcagtctgaag
tagtgagcagctaatcagctgggcaactcttgcagctgcacaatgaagttgaagggaaag
ggggtccctttcattcttggggtctcattctacaacccgatggccaaggcagacagcacc
gtccgctggccagggggtggggttaattcctgcaaggacctgggtgaaggtctgcctggc
caaggcagcccgttgcaaggtttgaatcatggctgtctcagctgggccatcgggtgggaa
ttaaaatttaatttagaaagtcctgtctctgcggccctggtggccgtcgtctgggtgatt
gactggctggtttctttcacctttgcacgtcttgggtttttactggcagaggaaatgaag
gctgaactggggcaggaaattccatgtacacaggtgtttctgattagccccgtgcacctc
acccaggggcacaaccaggggctgagatgcctgcatgagcccatgggcccctctctggct
tggcaactgtggcagctttgcatctagggaaggctggacagggcactcacaccgttgcag
ggcagacagaggtgccaaccagtggtctgctgcctggccctgggaacccggtgacattct
gccatggacacgagatcacacagcgcccttggccagaaccaccccagcctctgtgtctgc
agtgggctgctggtggcaccagggcctgacctggagattagcatcgccctgaggtgtgtt
tacacattgtagctggcgcttcatgtggctgacctgcccccattttcacatcttcagagg
ggcttagagatccaaaaaccacctcctcctttacttaaagggtctctggaggggtcgggg
agggcagccctgggcttggctcaagatggccatctgtagcagtggtttcagaggctgaag
aagcagctttcttcatcccataccagcttttcactgccactgaagcatcccaccattgtt
attcactgccatgggtaaaggcactcggggctcccgttacacttagagtatacctggagg
gaggggcattccaagaaatggctcatggagacacactggctggctctgggcaaatgtcca
ctccaaccctacccaccttggttttcccatctgtaaaatgggcatcataggaacaaagtc
tgctggatcagcacatggattaatgagatagtctgcaaaacatcaggcacatagaggatc
cacaaagcatgcagcccctgggaacattctcaagggaattgttccaaagaaaaagtattt
gatgaatactttgaagtattacattaaccattgcaaaaacattttaaccagttaaaatgc
tcattggttagttatagactaaggtgtattgtgacataataatgtgtaaccaataagctc
aatatGACAAGGATGGAGCCATATGA

Primer

(+)GAGCACGGGTATGGATCATT

(+)TCATATGGCTCCATCCTTGTC