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Mouse element [ mm1472 ]


Position: chr11:20,554,383-20,557,597 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Sertad2 - Aftph

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGTCGGCAGTTCACACTACAgaatgagaaagaaggcttgctccggggttcctgctcctca
tctgcacagctccctctcggggacacaccagcaccctgcctctgcccttgctcccacact
ctggtgcagaacagcctcatttcaaggccaacctcaaatgcctgtccatgaatccgtctc
cgcatcctcctcataagagcccatcctgtcctcaactctttcagggctccagactttgca
agaacaaattctgtcctggcttcacctgagctgcacacaggttttctttgcaacactaca
gttctgaagaacaggaaccctgggatttcgtcttctccagacgtcgtcacgtcacacccc
cacaaactatacactgccagtgttaataagcagtagagtggccccagacaatggccgtgc
ttacttaggtatgcgtccctagggctgatgtctgactccatagtacagctgagcaggtac
agttgtactgactcttagttcaaaggagttgccatttggccctttacagagacacattgc
caaagtgatactgcaacccacacaatccttaagatagtgttggcgcaaacaaggcagaca
ggctttcagtaaggtggacgtttacccctaaagagattaattggcttgggtgtccaggga
gccccagtgtaccagagtgctggagaggagggaacagggttaacagccaagccacatagg
agggggatatcttcagaaagctctaggcctatgaggggtctggtcttctgctctaaggag
cctgattatggcttcagaggagtagcattcagcttggctcattagaagaccctttgtcac
caaccccaagcctgctcctctctttctctccagccctaaataagtttggttttgtgtgta
tggaaaccggttgttatcccagctggtctcaaacacctgcatgtaagtgcttctgtcttg
gccacctgagttgctgaggctatagtttctctccagtctttttagcacagcatatcttgc
ctatagtttggagacctgaaaactcttccccgggtctgggatgggttggggggaggtgtg
cccctcctgacatacctacatcactaccttaaggtatggagaggagcagccagtaggacc
agcagttagccagtagggagaactttctgtgactgagcactctgggtgttctcagactcc
cttactttggcaatgtgacttgaggttagtaacttattgggagcaagatgaggctggcta
tctggcctctccttgtttgttatcacagtgggagggctggtcttggactgcagaccaaaa
ggatttgaaaaaaactcttgaaggccctaaggtgccacccttggaggcatctgggatggc
ttgtcctgtgcacgacaggatcagacagcacatggtgacattgtccctggagctgggaac
cctctctgcagcagtctggctgtctcagccccatagtgctacagacttcccccgcctccc
aggcagggccaagctgccagctgcctgcaaggcttattgttcagcagtgacaagaaatgg
ctgcagagcacaagctggagaaaggctggaggcaaagtgggggaggggtggtaggctgag
gaagctctcaatgcccctagcacaagcctgtgttcctgggagaagtctgagaggaaccca
accttagggagtcaggcccctccctcctcggcccgacaggcttgtctttcagatgtggga
agtgtgtcgccccgtttctgcacccaagcagaggagaaggctgcctcgggattcagctga
gtggctgaagacagagccatgtggcctgcactttggcaggctgaggcaagtcagcccgat
ccatgctccccttgcagttgggtctggagagggtccagagatgagaacagtttctgatgt
gtgcacagctaccaagtgttttccagacagctgtgagtgtgccgatttggggggtgtgtg
gcctgcagcactagcgggtgcttcagtcatgcccatccctgctgaaggcttggggagact
tggagaggttgagccatgaaaaccttgggatcagcagccggccataggaggaagtctctg
caaccgaaatcaccagggaccaaagccactgggagaggcgaatctagcgtctctacctac
cgaggagaatctccctcccatagccccagacatatgccgacccaccgtggaggggatgac
tgatgtagtcacagagccagcgcccactgggagccaaacccttggtcttgccagaccagt
cctgataaaggggaaacctcgtcctcccatctttctctctctcacctctttcctcttcgt
cagccccccttcatcctgcatgcctacttgaagttgaatttggttggcacacagactctg
gcttgtcctctgcatcatggggcctttgtctgggggctggtcggctgggcgtccgctctg
ggctcggagacactggtgctgcattctgtagagggtcaggcccaggatgggggagggatt
ctgatcagtcagcagctgggactagggttcctttggaggcagggtgtgtgcctgctctga
gcagcccggcaccccagcgggcaccccagtggcgaggaagaaatgcagaccagctcctct
gagtaccgcctccccaagagtcatctctgcgataccccagcggccagccggaaacgcaga
accacgagggtgggcaaagctatgtctggaaagcatttctgtctcagatcaccgtcttac
tgaggttttttaaaaaggaaaaccccgggtccagaaaggtttaggtaaggcagcacagct
ggctcaagaagacatctgagtgtgctgcaaggccctttctgcacatttgggaacacactg
ctttgccttccaggggccacaggtcacgtaaggcaatattgtggacttgtcaccaagcag
aaatccctggctggcttcagcctggctcagaagagacggagggaatagtctctgagctgg
ttagtttttgtcaacttgacacaaacctagatgacttgaattgtttccatcaaattgacc
tgtggccatgtctgtggaacatttccttgagtgcttgatcgatgtgggagagcccaccca
ctgtgggcaaaccaggggaagcaagccagtaagtggccttccggtttcccagtggctgct
gcttcagttcctgccTTGAGTTCTTGCTCCGGCTT
Primer
(+)ggtcggcagttcacactaca
(+)aagccggagcaagaactcaa


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