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Human element [ hs1444 ]


Position: chr13:100,338,445-100,342,077 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR4306 - CLYBL-AS2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTGGGAGGAGACCTTCTTTcaatccaggctacatgctctgagtttttccagggcatata
tagctgctccatttggactatgctcctagactgacatgggcctgactcgcaggagccggc
agctcctagtgctgagctcaccggctcggcccagcaccagcaccacctcccctctgagca
tctggtggccttgctgataacacagtgacacagccatttccttctatagcagaaacatct
ttggagttctgtttccacagtcctttgagagacactctcgaggccaggagctggcctcag
acataaaagtatttgtttcaacagagagagagagagagagagagagactcagtgactgct
ttttgagtgaattgttgttggctcagtttcagtaatgcaatgttttgctttagattaatt
tactaagcagtactaaagtatcatttatatacattattgaatcttgggatgattctgtaa
gcattactttctcctgaaatctccacttctgtctggatagtggattttaggataggtttt
taaaatggaaaacttgacgcagattcaaattttcaacacagcattgaacgaatagcatca
gttggggacgagctatgccaccaatttaaagtgtctcagccggggtcagaattaggaact
gtctaaacagggaatttcagaagggcaggggaggatatcaaggcacaaatgggaggaaat
aagccattgttcctttagaaagcttagtaacctcgataatgagaggctatgaaatagttc
tttttataactgtaacttcttaacttcccagccctaatagctccaagggtcacttgcaga
gagctccggggctacacctgccttgcatagattagggcccgctgcagctgtcttcatttg
caagactaaggtgtagctccaagaggctgtaggtctcagcatggagcactcctcctcaat
ctcaataggctggtgttgcggattaagatggccattgcaagccaggctcagaaattgcaa
gatgaggcaggtaacgatttcctgggttttatgtatcaggccttatgaggtatgaagcgg
gaaaccttttatatgcctgccttgaattagccataccttttacaatcagctctgttgaag
agcagctgcctggactatctagcatacccatgggccaggcatgcctttggcacacacaca
ggtttgtaaagagcttgtgaatctataggatgatctcttggtgaggacagaagggaccca
tagctagtcagcatcggactgagggctggatccactttttcctgtaatgtgcgtttgttt
cacagaaaatacaattaggataattcttgtgtgttctctacaggaaggaagtagtatact
gcttgtgaatggtaggctaaatgagggaaccattaaagggtttttaatagacttttgaac
caaaagacataagggactatacttacattgccttaactgagaaatgttttgcagtgtgag
aagacttaatcaaatcttcattacatacctggtcagggaccaggctgaatgtttctttaa
gcaattggataaaatgcacattgaagacttgttagttatgtgagaatatgtctgacatgc
ttatcatctctcctgcgggtgcctgagtatcagatacttggtttactgtgttgggttgaa
tgcttctgttctaatttctaatgaactttaccaccagactacttgatcatgactaagccc
aggaacaatgcaaatggaattgccccctgatggggaggaatgggcccagatggcccttaa
aaggtgataattaggaaatatagcatatctgagtagctagaaagagagaaacttgttaaa
gacagtcaatctgtttgaagcaacggtctttcccttaattatatgcattttcatttagag
ttgctttaaagtaaaatttttcccaggaaaaatttttattagtagtgaaaacctagaaac
cacacacattttttgctactctgtttcagattattgaaaattccttccttcatacatttt
tttttggtttccagatctgtgtaacagactcgctgtgtgtgttttaggggccgttttagg
ttattttagctcttatgctaaaacagtgggggagcgattaaaagtgagaaaaatattagt
atatatttgtaaactgagcttttaaaattaaaatagttgcaggatattacagtctgtgat
ttcatatactttgtaagattgccttaaatgtattgccttcttggcagcataatgccagat
ttttctccaatatgtcattaaaataattttacatataacaagttgaactttttaaagact
tatattttaatctgaattagcatatttactaattatattacttatttggcttttctttag
tccgattctttttttttttttagtgtacaaacttggcattactctttaagaataacaagt
gaactggaaatgagagggtggtgacatgaagagagagagaagaaatacattccttatatc
tcttccagctcctgcatggaatggaggatctgacagtggccgttcctgggtattaaagcc
agtgcaaaagatagagcgtccaaaaggcaacttcttccttatttgtgaagtcagaaagta
aaatttacattgaagtgctaagctacattattctgaatattttggcagtcatatttgggc
agatgagttgctttcctgaaattactcagcaccgtcattcatcctgacaaaagctagtgg
tacagatgcacctttgggactgaggccaaggtgaaacctgcgttttccaggtctgcccac
tcagttttggaaggactctcaataaaaccggcctcacaccccaagcatcacccctcctgt
ccttagtaagtacactctggctggaatctagggtcccagcatctagcccttgggacttca
cataaattcatcaagtatcttcctccactcaaaaatctcttacagaatctttgacatttt
aagcttcattactgcaaagtggatatagttcattctcagcttcaggattccagaagcata
cataccaggtcagaatggagaggcatcacgctttccttcagcaagcttcaggggagacag
gatttagggtgggctacacatataccagttgtaggatgttttgaactatattcttgcaat
cacagacaggttgtcccagagaaaataatctggctctaacttctcttgttatcagtgaaa
agcaaaaattacttagtgcaggtatgcttaaaggaagaaaaaggcaagagaaaagtgaga
ggtaaaaattattaccattttaattccatgattctcagcaatgaaggagcatgattgaaa
tcccatgtgcccagtcatatctgtaaatgagagtatgatttttgaagactgtattcaatt
gtttcaacttgagcaattgcaagtaagacttaggactgtgtttaccagttactgttattt
actattactttctaaatgtgacctgacttgaaacctttatagatgcaatttttatccatc
acagaacaagctctaaagaggagagcagcttcaactttttcaagtattttttttaaaagg
atttaactttgaCCAACACCAAACTTGCATCTT
Primer
(+)CCTGGGAGGAGACCTTCTTT
(+)AAGATGCAAGTTTGGTGTTGG


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