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Mouse element [ mm1425 ]


Position: chr10:96,508,744-96,511,858 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 4930556N09Rik(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGTAACCCATTCCCAGCACTgggatttttgtttattagtctctggtgtctagtggggcc
actattgccctattatagagtaacacaattatacatacattagatattaattaagatgta
aaacatatatatattaatttttaaaaatatttaatacttctgattaggaagcgttaacag
tagttgagttaccaaagatattttttaaaaaggtctttaggtagagaaggctatatgggg
aggaataaatgactttaaatcctttttttcccttttaataaatttgattgcacagtacag
ttaggcttaaaaatattcacactgctgtataacaaatccccaaaactcttcaccaaaact
aaaattcaatacaaatgaaattaccaggacttacactgcaacataacttagctaacacac
catgacatgactagacacaacccatccatttcccagttctcttctgcacatgggaggcaa
ccattttattgctcagctctgactctaccacaagaatagaggcaattatcagagcaaaca
caatatcatagctaaaagtttccttcagtagttttgaagttctatgcagcatttcaagaa
tttatacttattaatgtatttattacttgatgagatgtagtatgtaggtaatttcttctg
attaatctgattaacagaggtgcacgctcttgcattctaatttttcctttacataatcaa
gacaagggagacagtgatcttaaagtacattcagtgagtatgggagtgaatctctgcctt
gctgttggaatttgtgtgactttcaggcatcaaacacaccactttatagctgagctttct
cactatcaaatgaaagtgactttaaccatgcaacaagcacaattgtcaaattcacatcat
ttattgtgaatgttctttaaactgaatgttattgttaaaattcgactattcttgctgcta
atcaggcatacacagcttgcctcattttttttcttctcccagaatgaaagcctagtttta
tattgcaaaactgaattaaccattgtattgcagctttagtccagattgtttgatgaactc
tttctttggaccttttggcgatttgtttattcccagattgcttcaatgttgaacacttct
gggcccttctcgctactcagtgagcaaagacatacctactcattctttgttaatattgaa
atcaaggtccagagtctctctctctctcccttcaaagttttgtttcactggataactaga
tggtttaaaagatgttctcaattagtgagtgtttagacagtcactgcttatgagtgggtt
ttactttctttagtaccagcttcttattgtgttgacattcatataagccttcagtcctga
aggagaagtaattccattaaaacagcttcaaaacatgatagccacttatcattggctagg
gatagtcctctgcccttataaaatctgcccctgactgattaagggtggtttattttgaaa
ggcgccttcagagaaccaatgaggtctttgaaaatgaaactcacagggcctgtttactag
taataccaccacatacatttaactagcaactgcttgtgaattcagagccagaaggctctc
tgcaggtatggctttcagtaggttgtaaaatacttaaacagatgggacattgttattaac
atgggcaatatattttcattgtattagggttgaaagtgattttccagataatggcttaga
caaatgtttgcggagtctgtccagttaatctgccaaaatgtggtctgactttcaggagca
attccactttcctgaatgtttttgattaaatatttaagtcttgtgaaggtcttgccacac
tactgaagaacccctgttaattctcagactgccttctaacctgttacttagctcaatagt
gaccaccaaaaatccatttgaaacaaaatagccatacgttttgttacatactaggtgatt
tattaaaaccatagtggtaacaaggtctttttatatttccatagacttcatgaagtgaag
gtcaaaggattatttgataattattagatggcacactgtggcaggattccaaccaccaga
tggttgttcacccctcaaagaaagaatcaaatacaaacatgtaatgtcacctatttattc
caccaaaactgtctcttatataacaataattttgtcagacactggaaacacacacacaca
cacacacacacacacacatggcggggggggcagagagggagaggaaaagaaaagaaaaga
agagaaaagaaaggaaaaggaaaggaagagaagagaaaaggaaaggaaaggaaaagaaag
gaaaggaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagcaaa
gcaaagcaaagcaaagcaaagcaaggaattcacaaagacaagaaaataactgaaatttca
aaagtgcaatttaaattgctccaattagggctattgtggggctataatatttaacagctg
tttgacctagttaagtcagtttttctgtctcagctacaattgtcttactaagagagaggg
tattaaggatacacacctccagagatgctggaattgttaaatgagatatgggtgccacat
tcaaatagactttctggatagtaaaagagcaaacaaccgaagaatcttagaaataagaaa
agtataattttgaaaaattgggagtttcatgggatctggggtaccatttaaccctttcca
atttcctcagctgataaatgtcttaggtactatttttgcactgatttttattatttccta
cattcatggagtccttaaggtggccaccttgccctctattgtcaatacctctgagaactg
cataagccataataattgcttgtgatgttgttgatttcctatttggtcattttattttta
cctgtgatttcttggctccacttaaaaaccagtgctaccagaccaacaccctccatcagg
caacatacaaaaaaaaaaaaaaaaaaaaaaaaaaggaagtaagtaagtaagaaagaaaag
gaggtaaactgtattccttccagatgttgctataGCAGATCATCCCAAACACAGT
Primer
(+)AAGTAACCCATTCCCAGCACT
(+)ACTGTGTTTGGGATGATCTGC


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