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Mouse element [ mm1424 ]


Position: chr1:12,488,985-12,492,164 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: A830018L16Rik - 4932411L15

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCTTCCTCCTTTGGAAGTCTGtttcagatataatgctgcccacatgtgagtagtgtgaa
agtgaaaggcctccacagggtctgtaagttaaagcattatcttcagtcagggtgctatga
ggaggaagaagagaaggaggaccttaaagatgtggggtctattaataaaaaatgaggttg
tggtaagcctagagtaagtactgagaccctgactgcttcctgttgtaggaccctggtgac
ctgccagccaaaaataaaaacactgagaccctttaatacttcaaagtttaggctttagtg
gggcagaatctcaactagcccatttaaattatcccaaccacctagctctgttccaccacc
tgtctagctattacttccaggcccataattccttctcttttccctcatgtctcctggaaa
aaaagaaccttcctctttcttcttcccggagtccctttctcagcccagaagtctcacctt
ccacttcctgccctagctattggtcatcagctctttataacaaccaatcagcagtgagat
gcatctgatacaactcttagtctagggacagaggacagacagtatgaccttttctttagt
gtttacaaaacaggaggctggtaatgggtcatagtaatgacaaaaccagaatatcatagc
atttagctcactgaacttcagcaactaacaactgagtatacagagatacacgtgtgttca
tatttgtacatttgtgagggcaagtatgtgttcagtgatatgtatgggtagtcatctgtg
tgcatgggtatatgtgcactgttgtatgtgcacaagtgtgtgaatgtgtgtgcatgtgtg
tgtgtgtgtgtgtgtgtatgcacacatacgtgcacatacacattcatttggagaccagag
attcacatcaagtgctaacagtttctactttgtttttgtgagacaggatgtctcattgaa
accgaagctccctggttcagttagactggcttcccagcattgggattacaagggcacact
attgtgtctaccctttctaaaatgagtgctggggattcaaactcaggtcctcatgcttgc
ctgacaagtcctcagcttgactacctgagccatctccctatcctctgcaataccattcct
tatgcttgtactcttcacatgctagttatcaaaaaaatatttaatgagtcaattgaatgt
gttagttttctgcagggtcctagttgtaagttcctcttgttgttcttctttgatcacctt
ctctgtccccacagctagccatttcaaatcacacagaagccagatgcttcatcataatgc
tgacaggaacaagccacaagaagtcatcattacctcactgcactcatctcaatccacaac
tgcgccagtcaattgtgggagacgaagtatggaacagtagtgacattgtactgtcactgg
agggcttcatgtgatgaccccatagccaccaaattgccacacttaactaatgtggttttc
tttctgtaaatgtcccctacgttttgtgcctcctgagatgtcttgagcttaaaatagttt
attgaagcatttgaggcatgcggctggattgatgggcagtgagggagacttccagggcct
gatctgcagatctttcttgctcagctctcccttatttagcagtctggatgtcgtttgatt
tgtgccaggctcctggcagtccttctgtttttccatgtgcactgacaaattttacagggc
aagagctgcataattgcccgctgcttttatgagcttagtcatagcatggctggagccagg
tgcttttcccagctaactttcactatgggttttagacagttttgatttcttccctaaggc
tttgcaggcaggcaggttttcttgaggtatatttaactgccccataattgatcatttttc
ttggaatatttaacatcatttgcttgagtctgtgtgcttgacccattgtctcagatactt
tctctttatatataaatgtcccattactttcagacacagcactgaagttgggtagaatca
gaaaattctcgtgtcaaggaggaaaggcatccactctgataagatcttggtaagctccct
ctaaagtcagagaagcagcctgaagaggacagttggatgaacttgggaaggtcgtttcat
tgcactttgatggtggaacattttctgattggtgtgggatgagcatgtgggcttaaaaaa
atgggggtattgagttttgtttcaagtaattaattactccttctgaggacaaaattattg
aagaacatcttgaccacttttgagctaataatttcccacatccttcttgttgaccttgaa
ataaaacacattgcataagtcaaaactcagatagatgatgagcagatctgggatgagaag
cgtgagccatcagaactgctaatgacagaggatggagccctcatctctggtcattttagc
aaatagtttaggtgggaaattctatgatgaacttatagtgaacatggaacatctctaagg
aaagtagtcttgttaatgtaccctgattcactgggtcagggcaaactggatgctgcaagt
ggctggtgctggtggctcatagtctgtccattcagaagcaagacttttaaaacacttgtt
ctaaagccaaaatacacaattagtattgattagggagtttaaaaacagaaaaccataccc
cacagaaattaatttaaattactcatgtctaaaagtaggcaggaatatgttattcttgtg
tgactctactgtataatcaagactaagaatcacagttttcttatatctggggggaaaagt
aacttaaaacaccttgaaagagacaaaaatgatctaaggaaattcctgaatggcaaggtg
caaaataatgcatttaggaaaacgtattctctgttgcatggacagtgtggcagtgaaggc
ttaagaaagcatggtactttaaaactgcaatgagtggatatttacatgaacaatagaaat
aaaagagcaaatatttagctgtattatacaaagccaaacagctttgatgtggagccccgc
actgtgatgtataactatgttgcagcgagtaagaaatggattgaaaataaacgacatgat
tgtaagcataagacccggcaggactctcctgatgctatACAGAGGAAAATTGGTCATGCT
Primer
(+)TTCTTCCTCCTTTGGAAGTCTG
(+)AGCATGACCAATTTTCCTCTGT


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