Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1409 ]


Position: chr13:15,303,835-15,306,508 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCATGCACCAGTATTCCTACAAactctgaccagacccttccatgcctttcttcctgggcc
tccaagagcagggttgtccacctcctaccatgctagtatctgtgcacctctaccagtctg
aactatctgggtctgtcaaaaccttacaaagtacttgtgacccttcccagccctccctgc
agactcagcagggcaggcagcaccgatgacctttgaaatcacgttctttacaaggacaag
gagagagctgagctgtgtttccaaggaagctcctaggttagcagacgctgccctgcaccg
cagcaggcaccagagttcctgtcaccactggaagaattctctggctatgtgatctttggt
tccagcctttctagtgaggttccagatcagccccatatatgcttttattgccctcagtgg
cccccagccctcatctgagtcacttggcagtatttccagtggatagcttggtcagctcag
aggggctacacacatgggtggaaggacacaggttacctcatggttaatgtttctaagaga
aatggtttcctgaacagtattctcctcctgccctacctcctggctaaaatattaacactc
cccaacctcaacacttcatcctcactgtcctctactgccacagtcaacaggcactgggaa
aaccacattccttgccgtgcatcattctagactttgtacagttcctgggtttttaagtca
ctcctcaccctcgatgattccttccttgccttcgtctcagcttcagggttcatgtgtatg
tccacccagatgagggctctgcaggcagtactttccttctggttccctttctccagcagg
gccaaccacggctcacagcagtagagtcagcagcatctggcttgggttggtctgtgcata
tctggaatccaaacagtttaaagagttatggctccaggaactgtggatggcaacgttttc
tattattaacagttccaactttcccatctggctgttttcagagtgaaagctggagattac
tgtcagcattaattacaatcaggtgcacttttcttctactccatgttgtcctgactgctt
ctcacacagcaagaaatccttaaaatgcatgtgccttgaaatgtagcgcataaatcctgc
tgctggtgagagcagctgtcagccccctgagctctttctggacttgggtgagcctcccca
aggtcacgaacacttcctcaggtggagaggtccactggagtccttggcgctccaccacag
gaaatgtcaagagaattggtaactttgtgagatttctggcacttcctgcttccagtctca
ccagagctacttcgcagcatgttgtgtggaatgtctgccttcaggatcccagctgaatca
gaaggcaaggtcacaaaaacaaaacaaaacaaaacaaaacacccccacaaaacacataca
aacaaaaatgttcgctcccgccttgggcatcacagtcctacctgcttgtcgactcttttc
atccagcttctcctgtatatttctagtcagtgtatgaaaataactcgattttgaagtcac
tctttcccgtcatgtccttatatgcctattcacatgcttgttgctatgttctctggcaat
ttctttttattactctcattatttttctcctcagactctatgaacctgaatccacacaac
aggaacgttatgcttttgtaaaaacatctgaatttaattctgattccccattatagggtt
ttatttattcctttgtaatggctgtgatagtaaaggcgtgtctctcccgttgctgaggga
ctctgggcaagtttccttgctgtattatagatcttcactgtcccccacaagatctgtgta
gtgatggcttgtcccccagatggtagaacattcaaatgttggagcctagtgaaagatcac
tagggatcacttcagaagcagcttatgcccctatctccttctttgatcattggccacaag
gtaagcagtttccctgccaacaactaataatagaggcagttaatagaggaccatgattca
aaacaactgttctcttttagaattggtagttccagtattctcttgtagtgatggacaggc
tgcttaaacctgctgaacttattaagatctgcaaactagagttgctagatattcacaaag
tagctgagatggcttagacaagaaatgacaaggttgtaggtatgagaggctgtttgggag
catgttgcatgatttgggctgttagaagaaggatcaattctattaatattgtccataggg
atttttttcttaaagggagaaggagagattactattgtatactacatatatggaagtggt
gtgtgaactctatgcttttgattctgttatctttacggaaacctgatcttcataggcctt
tcctgttatctgcagctcatgcacctgtgttccatcccccaccttcctgaggcataccac
tcacaaaatagtgaacttggtggggctgagggtaataaggaccatcttgtaagatctaca
caggacttgcttcctcaatgagacagagcagaagaatttatcacaaccacattggttgtg
ctgctaactcagtccaggtcatgacttgcttgacttcaccaggttgtgttgcttgccggt
gtgagttctgttCTGATACCTCTTCTGCCCATTC
Primer
(+)ccatgcaccagtattcctacaa
(+)gaatgggcagaagaggtatcag


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.