Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1409 ]


Position: chr3:157,636,456-157,638,041 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C3orf55 - SHOX2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTTCGTAAGATGGGGTCTGtggcttttggtatgtgttcatctcttcccctagcaactct
attgccccatggagtcagatctattcttctcacaaaaatgtatagatattttgagttttt
aactgttttcttccatacatctaatcccttattcctttgaagttaggagactgaaccaga
cttctttctaagactgggatacattacaagctaaaaggttagtgatcacttgtaagcaat
aagaaaatgtatattataaattctatatacatatatatatgtatatattttctaagtgtt
acttctaaaaaagatctgttgggaagaataacttccataggtttgtgatcaaaatctcaa
aagatgttttcatttttaaaaaaatcttaagcttttgttgcaaagatatgaaacatcata
aaaatgattgcaggtgactagccagtcttttgttatatctctaaacataagacaaacaat
aaagtggggttttttcttaaaagaaaaaaaaacctcaatattagtcacagtaagcctcaa
catatgggaataggtgcagggcgggtaagggggaggggaacccactcagtttttcaaacc
tttaaaactgaaaaaatatgtatccctgctttctgtatatgcacataatgtaaaatttca
tcaaccacaatattttaaaagacagaaatcatgagatatatcacatctaaatggaaatat
catctaaggaagcaccatttatcaacatcactttgaaatgcagtggaggatgtgatggca
ttatgtagatctcaaatatctatgggtgaatgaaattgggtaaccttagcaaccccaggt
acatccatgcagctataaatcaaatgtcagcactctgagctatgcacaaaataaagaaat
aattctttgaaatattcataacactatgcagtgtattattttgtaagtctgtccccatta
tgcatttttgaatctagctaaaaaaaatacacataacatttgcataatgcatcactccca
ttcacccacccacccaccaaccaacatccttacgagcttctggaaacaggcagacctgca
ctatatccactgcagaactctggttcttatgtttgagaaggagagggaattttataaaca
ggcagctagtctgacagccaccgaaatggtttcatattgactactccattaaaaaaataa
caactaaataagatatgagaattttggaaaaagtgtcatgatataggtacatttttgtat
ttgtgaaagtaatatattcaatattccaatctctgaaactggaagagatttttttaaaaa
ataaattcttgctggcaagaaaatatactagtcttctaatcgggagtatcttgtcaatat
agagttgtagcatgtaactcaaaataaagacttttatttcatttatacttcagatttttt
tctttgataatttagcttatttggagggtattttataaaaatacatttattagcacattt
taaaaattctgtccctacacccattcctggaactgacagtgcaggtgtctgaatatccta
atgcctGTGATGGATTCCAAATTCCG
Primer
(+)ccttcgtaagatggggtctg
(+)cggaatttggaatccatcac


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.