Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1399 ]


Position: chrX:99,180,954-99,183,481 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nhsl2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAACAGTGCTTGCGAGATCCtccccactcccctttaccttccttcacttccggttcctat
gctcatcccaattcatatactcctatagaaccttcaaagcccattcctaagctgtttctt
ttataacatgcagagcacgcaaactccaacagggcctggagaccctttgtagtaagtgcc
tctgcttatttgaggggactcttctctatcgtcaactcactgagagtcaagaaattaata
gtccttcctagtaactgcagccatacagacaaggtctgtctctccttgtcagaataagag
cttgagacagacaactatctacaaggtgcttctcctgagcctttgagagggtgcaccatg
gagaattcgtgtgagcaaaaacagcagtaaaggacttcttggcgtggcctcattgagcct
ctgcttaccttagttcagactatgcagtaagtatcaggggttggggaatctggtgattct
gcagtcctcttcccaaggacatgctgggatgaagtcaaatatttctctatgcactgtgtg
ttaccagagttccctacctgcccatgtcaatggcggcttctggtgccattttatagtcta
ttctatagcgattgtttttacatcagtagaataagattcctaagcccctccccaccccac
cccacccccagattgcaacttcccaatagaacaacaagaacatttgcacactctttctct
ccagggcttcttttcttggtggggagaactgggtatggatgtaaagccctcctgcaatgc
taggcaagtgctctaccactgagctgtagccctagcctccagtaactttagcaggagcct
gagctgatccgcctgcagttcctaacagcttccctttcaaaggacaaagggactcttctg
atctctcggcgctatttttatttttttgtactttgaaaaataaaatgtatttttttcctt
ttttgtcatagagatcattgcttaaagctctttgtgtagtaaaggtagtaatcctttctg
tcctcggctgcagacattctctcctagcttgctactgtgatttctagggtattgtatgtt
gggggtgtgttaacttttttaaaagatgatatcgcatatggtaacattttcctttgtgat
tcttatgctgagaagtctaagccttctcccagattggagaagtactcctgtgtaatctcc
tagagtgtggaaggtgatgtcacatgtgtcgtagagtgtttcttttctaacttccaggca
tccctccccacccctcgcttaccacaacctttctttggaggcacaaatcaatcaattgga
ttggagtctcaaatatgctaatgaggtcaacccctttcccccccccccagctctttcagc
ccctttgaaaagggaaagcttgagggaggtacttctcccagtgggctgtctcattagcag
gagcaaagaaggaacaaagtgcaaaggaacttccaccccatctcccctccttttatctct
cttaggcaagtttagtgagatccaaacccagagctcccagttaatggaaggtcctgggac
tctaaccgatcagactccagcaaagtcacgaggccagtagccagagttcccccagcaacc
gccaggccaggccactgcatcttctccatccagccagcacggttaccatgggaacatgag
tgctaaattgcttttcgagtatagaagctgaagacctcagctttgacgcacatagcccaa
aaattgattgacctccaattaggtttttgttgttttcttaaggcatctttctgttttcgt
cttgcccatacgcctcctgaggtctgcatcagagactcaaatatttggctccgtttgcta
aaaaagaaaaaatatatatataccttgacttatttaaaaaaaggatttaatgtggcttat
gaagatgcacccaatacttggacccaaaatttgatgcaagaggaggatggagcaaagagt
aaacaaggatgagttgaaaagaagtagtaagagactggatgtcaggaagtccctgcgtga
taaatgagagtcccaaaggtagctcttaggctttcatgggagataacgaaaatgggcagc
agaatcgttacaagattcacagataaaaacaaatcaactgattaatagaagctcaagtgc
tcctaaccttgaaacaaaaagtttgctttcctcctgtagactctaaaaagtgatgtcatg
tttctccccctgtacccagcagattacttaaaccaattccaagtgtagactaacttctgt
agatggtttggtttccaaacttcttcacttttattattgttgttgataaataataaacgc
acatttctggtaatgtcaaaagggaagaatacaatgcagcctttacaatgagttgagcaa
agctgtggagatatctcagtcgctaaagtgcttgccatgcaactgtgaggacctaagttg
gatactcagcacctgcttagacctgtatgtagtgatgtagcttgtaatCTTAGTGCTAGG
GAGGCGAG
Primer
(+)AAACAGTGCTTGCGAGATCC
(+)ctcgcctccctagcactaag


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.