Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1398 ]


Position: chr5:99,701,432-99,704,258 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Rasgef1b - A930011G23Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCCATCCATGACAAGAGCCAacctggttgagggctgagctttgggaaccctgagcacaca
gccagaccagcaggcaggtagatcacacacacttgcttacccagaataccaactctatgc
ccctctacaggggaagagggagaggccatgtggtgaggctctctgaaatctgggcagggg
tctctttgtctaggttaagtctagacttcagctttatccttcatttaatctccagctttg
tctccagagtccagatgaggccagcagcatcttctagggattctgtgcacaatttccctg
cctctggctactgctcatgggtacctctagccctgggattctcattagttgacacatcga
ctctcctttgattaattgagaacaaagcaaagcaaagcaaaataaaacaatgtgtccagc
ttcctcttcttgataccttctaggagaaattctaaaatgttatagctggggatgtgggac
attgtgtgtaggcagttccaggaagcccttgttaaccccaagggggggggttggcatatt
ctctccaaaagaggtcagttttcattgttgttaagtgatggtggtggtgtttttgttttt
ctttcgtcataagagacaaacagaaggtctcaggttttcagaaggattctccaggggtca
cccttccatctaggagtcaattgtatctggatgatgattaatgataacagatatgtaggc
cactcctcttctatgcacacagatactgacagtggaggaatgagtaggagctacacaaac
cactaaaggaatgtgataggccaagtatggtggcataggcctggaaccctaaaattcagg
aggtttagtcaagaaggctgtggtttaaggttagtctatgttatgcaagaagactctgcc
taaaaaaaaaacaaaacaaaaaacaaaaacaaacaaacaaacaaaaaacccaacatgtaa
agaagggagggagagactcgagaaatggaggggaaaaagggagaagaggggtgaagagag
agactgagacaaagagagagtgagagagctagagagagagagagagagaacacagcttct
cagacacaaagacctaaggaagagtatgcccacaggaaatggagcctaagttccagctaa
gatgcttctaagtagagcccagctcctgagtctccagtgacccttaccacagtcaaggac
ggagagacgtctgtgcttacacagagggccttccattaggtcaaacttagtcttaaaatt
gtgcagcagagggggtgtcatttcccccctctgacataccaaatgtgtttgaaaatagaa
gattctcacgggcacctcagtaaagctttttaccacccctacaatatagctgtagaagaa
gcagctatagagcaaaatacataaggcatggaaaagcacacatctcacaggaaaccaatg
cctacttcttcatcaggaaaagattcagattgtttgcctcatgacaagagacaaaagggc
ccctgccaccctgttctccttccatctcagagatagaaaacacctccttatttagcccat
gacctatgactgccgtatctagacttcagctctagaaataaaaaggaagagaaaaatatc
tccaaacaggttttcaaagaagggggccctctttccgccgctgtttgctgtcaccctctt
tcttttctgcttcctcgtttcagcttgacatctcctcaaacgctacctgacagcctgccg
ccatcacccgtgaatgtaagtaatttccttattgacagcctcccattctctctgacatct
gccagcactctctgacacttgaataagtataaagacattaacagtctggcgcaggttgca
gggctggaatagcaatgtttggcaggcctactgcacagagcctgcaagcaaagggacccc
cactcattcaacccagttgtccttctgcctggaagacgcattggagcccggagtaaatgc
cgattactcgctccagtgcgctggcattttggtgtctccttcggcagccagattggacat
taaagggaaagaaacaaacacacacacacacacacacacacacacacacacgcctgtttc
tgaggcagcatgaggagccagccagatgacgaggctcaggtcactgttttgtggggtgag
ttagtattttaaacgggttggtttagaaaaaaagggggggggcaaaatcaagctccccta
acttccacactgaacgtttgcatcagacttccttctgataatagcaggttcgtcccacat
actagagctgacaaacgccatattcacgccaaggaattttgaaagcaaatatgtcacatt
aatgatgatgacgatgacgacgacgacgaagatggtcagaaaatgattaggaaagaacac
cctggcagcctttgttgctagaatctgctcatgggcaaatggcaaagctattcacatgga
agacattaaaccatcaagtgagtcacagtgtgtgtgggggggtggggggggtgaagaaag
tgttatcttaattcttttctaaagagagcatgtttgggatcgatcagaaacctgtaatcc
acccaggtgatgctaaaattaaggtagagaagcagagccctggatgagtgggacactttc
ttgagtcaaaagtgactcaatgtgactgcaggggcggggggagaattaagatgggctttg
taggagcctaaagtttctaaccaatgggccagcaagagtgaggggcgcatggctctttgc
gcatgcgccttcggggcccaagtctgcccctctccggtttagcaccaAGAGGATGAGACA
GCTGCAG
Primer
(+)TCCATCCATGACAAGAGCCA
(+)CTGCAGCTGTCTCATCCTCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.