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Human element [ hs1395 ]


Position: chr9:71,422,469-71,425,428 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: FAM122A - LOC101927069

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGGCATATAGGGGATCTGTgtggctttggtttctcaatagaaaatgacataaacgcaga
aatactttgcaggctgctacaggaacaaaggcaaacagacttgtttgtttgtttctgaga
ccaaacatttttctgccaatcaaaactggttttatttgcatatagtgtatcataaattgt
tgtaataattgaataattcccaaggcatgtactcttaggaaaaaaagaggaaaatagctt
agaaataaaatgtggacaaaaagcataagctggtgaatgaaaaatgagaaatattgccat
gtagtaaagatataatattgtgaagtctacccagtatcaaatgtatggtaaaaactaggg
aagaggctggcacagtggctcacacctgtaatcccagcactttgggaagccaaggcaggc
agatcccttgaggtcaggagttcgagaccagcttggccaacatggcaaaaccctgtctgt
accaaaaatacaaaaattagcctggcgtggtggtgtgcatctgtaatattagctactcag
gaggctgaggcgggagagtcacttgagcctgggaggcagaggttgcagtgagcagcgatc
atgccactgcactccagcctgggtgacagagcaagattctgtctcaaaaacaaaacaaaa
caaaaggggaagaaaaaatgtaagcaagttatagaggcaagaagttcaactatgtgagat
tatttgtgattatcccagatgtgactgggaagagatagaaaagtaacagtgttagttaaa
tctccatggattctttgcctccatgccaaatatcatgactatctaactaattactccccc
cgactcccagcttccccaccaccccgacactatcaccagatacacacagatacatactat
gtctttgtatatgtaaaatgaaaatcattgcaggacatcatgcagtagcagtgtttttca
tgaaaggctgtgagttacattggtctgaaagcaacacatccgtcatggctgttttcactg
gcgactttcttctgtctaatgtttgcaatgaaggcttggcttgaaaaggcttatgaattc
ttttagcacaacctttgttgggaaaatgaattacaagtggttcatttgatgctgatcctt
ttgtcattgccatttatagctattctgtttattcactttgggagagccattctgagaatt
gatgaatgtgttttatgagagaatataagagccctgcaatttgttttgattggtctccat
ttggattcatagcgagcaggtgccatcgtttggaattggttttggcagtggcttggttat
ataaatattagatacatgaagtgaaacctcatttaaattattttcatcagtaagaatagg
agagctttacattgaatgtaagacaccatagttctatttttacagcttctaagcatacaa
atgtgtaacataccatatgtctgaacatatgtatgtagaagtggcctccattgtacaaat
atttaacatacagattttctgcatttctttgagagtttatgcaaatattctttaaaaaac
tctaagcctatagtttcttaatataagaattttttctggtctgaaaaatacaggcatttc
tgctttggaaactatgttaaggattgtttcagtttggtgttttttttgttgtttaagcct
cagaaaataacccagcacattttaaacctttgctttctcctgctttttgttgttgttgtt
gttactgttgtttttgttgccaaacccacattaaaaaaaataccacgcctctttgtaagg
gctctagaagaagaactataatacttcctatcttcccagcaaaactgtttaccaggctga
cgttttcctaagaatagctccctaggttttcatgaatccatataaatttccacacatttg
ttttttattctggcacaaaatttaagagggacttacgatcataggtggaaggagcaatga
ggaagtctgttggtaaccctttaggtaacatcctaaacctcgggctacttgcgggcaaat
tgttaaaatgcaggactcatgatctctgagtacacccatgaaaatttaaatacccttcac
ggtgctgggtctttttgtaagcaagccaacacggtgcccagactcttttccaccctctag
ctctcaaccttatgtccccagcaaacggctctaagtccaatttcagtgttcttcataagt
gaagctttccatgagccccacaggctgacttatgcagttcctcctccaaaaacccagagt
aaaggacatgccacattgtaaattgtagccactgcaatgcctgtctctcctgctaatagg
attcctttgaagacgagtacctgtccttgtcattatggccccgggcctagcttactgcct
gacatgttatgctccataaatgttcattgaatgaatgaaagagtgaatttatttggtgtt
aggtaataaaaatgaattcaaaagagcataaataaaacaaaaatgattgactttaacatg
caggtgtgaccaaggcccaaattatcttccaattgctttgtctttcgggaaatgcgctag
gaaatgttaacatacacagcctgaatggcatgaaaatatttgaatatggctatcctattg
gaagcccaattcccatagggcaagttgcactcataatgaccaaataatcaatgagtcctc
tcctcattccaaagaggatttgaagtgaggccctacctaagaaacttggcagaggcacca
aaacaaaagcactatctaatggagttagcgcaattcataatcgaagagaagtggacagca
gcagagatggacatgaaacccaggccttcggaggcctatcccagcgttcttccaattcat
tcttgttgcttcactttatcagtgtttaataaagtgtttgtttttatgggaagatgagta
AGGACTCGTGGCTAGTGTCC
Primer
(+)ggggcatataggggatctgt
(+)ggacactagccacgagtcct


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