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Mouse element [ mm1392 ]


Position: chr3:97,896,495-97,899,340 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Notch2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCGAGCTTCTCAATCCTTGCtgtccctcaggagtcagctcagattcctttcccattctga
aagttgacttctgtagcagtctgtcagtcccacccttttaagcacatatttccattttga
atctgtgtttctagttcttctgtaaagagctattcacagttgggcaggttagcatacttc
tctggccctactcctcatctcgagcataattggatttgttgctgtctaaagtctgttttt
ccaccaaccccaagtgtatctggcataccttctgaagcagatggtagatccagaccctct
ccttgtgaaacctgtagcctaatgggaggagggatgagagtcgtgggataaagtccagct
ctgccagattccaggacagatgactggaacagtggcagtggtgagtctccgggagatggg
catgtagaggtatggctgagtcacaagcaacgtctgagggatggtgagtagctaaccctg
caattggaaggggtagagagcataggatgtgcggagccctgccataggaaaaaaacccag
cattagatgagctgccagaagctgttgttggtcagagaagatgtctgaaggggagggcta
gtcttgtgtgacgtacagggacaagccagaaagttttcggtagcttcagctggtgtccgt
gtttagagtatctgccagctgcagactggtgagtgtgatgtctcagaccaaatggatcag
ggccccctgtgactgtgttagaaagacaagccctactcttttccttctgcccgagggagt
cggagagggcctgagcagcccattgctctggtcccaaggttaagtggtggcagcctgcag
catctccaagtgaaaattactacgaggtgattattgtcctctgaagacttgcctcactga
actctgcagtctactcagggagttcacagcgtggtttgtgttgacccagatgacagggtt
gccaagaccggggccgggcaacaacacaagtctcccttcccaccgcacactttgatttgc
taggtagctcaggacttagtattctccctctcttcctgctaagcatcacttgtccttgcc
ctccctgtattcacagatgatttactgtcaatcatgtcttcccccaactgttctttacct
gttacatcaagtccagagttcatattcaaatttaaagtcttaaaccatctctggcctttt
aaatctccagtaggagagtacaccgcattcatttgctgtcttctagacctgcctgtgttg
ggtctttcttctgaagtaagcctccttcctcccacaaaggcaagcactgtgttcctgagg
ggaacgagaaaagtcgaatgagcagagagcatgcacccagtgtcctttgagtgccgaatt
ttcccatcctaatctctcctgacctctgctctgctgccttcactaggatggtctttatct
cagacagctgcgccttctcactggactttaggaactgggggcagggatgaagatgtagct
gagaggtagagcatttacttagcatgtgcaaggtgctgggttcaattccctggtactgcc
acagaagcccctgggctgggggaggggctggggtttagagttggcatggtaacggttttg
gtgacagcgctccctgagcttgggaagcttccttgatgctgaacccccccccccccccca
ctgtgggcttctttctgcctgggttttctcctgctcaaagcagatgtggacacgaagtgt
ggtatcctaggaaacgtcttttggaagttttggagcaaggggttgtagtaactacccagg
ctaccgttttcagcatctttgaccatagagcttggtgacagacttgtatgagggagaggg
aaagaactatcagaaaggagtctaggaggttcttgttctacaacctaagagaaaaatgat
gtggtttgcagaaaatcacttctaagctggggtgtccttagctgtctgtttttgtgtcta
gcagtgtcaaatggacatatagatgcagcctcattgaagcagccgtgagctgcccacccc
tcaagcatgtttccatttcaggcagtgcattgctgctgtaagttccccctaatccagcag
agtgactcatggccttggtcttcacatcccacccccaccccatccctgccaccccatctc
agcccacccccacccctacgccaccccctgcatgcctgtgcccttggaaagatgcagcct
gtagcgctggtccgatcctgtccgactcacaccacgagtctgtgttaagtttagtgcaag
gtggaccagttacagtcccagcttccctgcccttgctgcctgccagtgactcctctgagc
ccgttgttcagttacaaatgacatggtttgggtggcagctcacaatgtctgcttcattgt
agacaatccagctattactatcgtttcccaggagtgtcaggtttctttcccaaggaaata
ttattttacctactttttatttcttactcagtctctcttacgatagtatgtataaagtat
atttttaaacacaacagtgtctcatacccagatttatctcagggcctcactaaagaatgg
tgacacggaccatgctagcattccacacgtcagggaggttcaggggcagcacagccgact
gtgttagtgtaagtgcaatggctagactcagcaattacccaggttacaacagctctttac
ctactttgtggtcatgtatttatttctcagccccgcctgaatcctaataacacagctgtc
attctttgaagtagcatttttgctagaagcgtaagggagcaaatgttttgtaccgaatga
cgtcatCTATCCTGGGGTGGGTGTTT
Primer
(+)CCGAGCTTCTCAATCCTTGC
(+)AAACACCCACCCCAGGATAG


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