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Mouse element [ mm1390 ]


Position: chr18:69,706,161-69,709,018 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Tcf4(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGAATGTTCTCTGGCTCCGTgtaaaatctgagcgccaaagccatagccttcccctctacc
ttcttctgccctggcttacccatcagttcctctgtacactgtatcagatctccttgatta
ttgactctgccacgtcagctccatgaatcttttcagccaggaatggtgacatggctgaat
tcggctcttttttccccctcatcatcttttaacataactcatgaatcacgtttaaccctg
tagcattgttgcacctatgatacctcttagaaactttatagtgcagtgaaggttgtatgt
atgtgtcttctatattctcaccctttttacataataccacttgtggtgtctacacatgag
attgccaaggctaagaggagtgaatgttcaagaactcccagctctctagtttcctatttc
caccaggaggcaaacctctgttttagtgatttttttttctttagttgccttgttgtgaat
attttaatctgtcctttcaaaatctttcttgctttcagaatttcctttccctacagagtc
ctcatgtcaaaaccaaagaaggtgcgactgacaagatgccttcctgaggagggtttcagg
aacaggaaatggccagggttgaactgaaataaaattctctcaaaacatcaaccacaacag
aagagctgggctcccatacaggaggaaatgaatactgtctttttatgtagtttataaatt
tggtatcaatatagcttgaaccagggcagggaatatcccaatgtcaatttgaagcacagg
tcattggaaaacaaactcctccgttcaaatccatcacattacgaagcatttcaaatcatt
tgtaaacactcttggtttcactagaaattcttgcgcccttccttctgtctgtgttcaata
tgtcctgacttttcaactggcctttagtgagcagtctgtatgactcatgtaactttgatc
tggttcttctgagaattgtaagactttttttttttaaatctgtggatgagcctgtctcct
atgtgtgtgtgtgtacacatgtgcattcacatatgtgtgtgcatgttttgggtgtcattt
ctcaggagccttctaccttattttgctgagacaaagccttccattgtggtcaggggctgg
ctgactagcaaggccacagatccacttgtgtctccacccctcagagctggggtcgacaag
gacacatcatcacaccggaatttgtgcttgggtgctgaggacagagtgcaggtccacatg
ctagcatggcaagcaggctccctatacccatcccccctatcttttcccatcagctctctg
acttctaaatattcccttcagggacaatgcttcagttggaatggctggttttgcactgga
tacttagtaagcaagcccatgaaagctagttttggttttgtggcttgattgctcatccta
atgtagttctggggttgtgggggaggtcagcatgtgctcgcatggatgagtgtcctcttg
agtcatggggcaccctgcttggcaagctctttctcctctgtgaagggtcggtaggatgag
acatgagctcaggggaggaggcagcagctctgctttgatccattgcaggatgtgtgctag
acctttgatgttcactttttaattgcgagctaaaagcacacagctcttttctacagattg
acaagctgatgtttgagccgtagccaaataacccagtttagtgagcggctgagttttgac
tttcataaacatttaatgaatacatttttatttatgtcagtttaaaaaaaaatccagctg
ctgtttgcaaccccccccccccaccaccaccaccaatttttttacgctaatgccaaaatt
agagtatttctggatttctggatttcctggggagcacctgcacaggtgggaaattggcat
aaactaaaagggaggactcgctgcttccctgtgtgcgtgtggggcatgcgtgctgtttta
ggaggaacccaccatgtcaccttctctcaagactcagccatctctgcctttggatttcag
aggaaggagcattgtggtacaggagcaatggggctttctgtgatggagccccagatcagc
ggggacttctagttccttccctgaccatctgtttgacctttagtctacagtgtctggaga
ctttgcctttctgccaatttgtaaaattctattctatagggagtggaacggaatataaat
cttgggggactctgaacttcacagccagtattgaacatgtgctctgagctttaatacctt
cttcagtctgaaaatgagcagaacttgcttcatagatatgtttgtctccaaatattttta
tttggaaggtttcaaatacaaaaaaaaaaaaaaaaaaaaaaaaaatcagtgttaatgtgt
aaaaccatgtctccatccttcagtttcaacagatgacaacatttgctccgtcttcctcag
catcatcctacccacttgatgttttttcaagtgttttaaaggagattgtaggcagcatat
cattttatgtataaacacatagtgtctctgactatagatactataaataaatagcatctc
taacaaataatctaccccattgcttaacacatccatagtgccatagccaaagctggcaag
gctctcagggattcttcctgagtaccccagaactttctccagctgcctgacaaatgtctt
ttgtctctgggcacagtggctttcacctgttaacccatcttgtgagagtaagaggattat
gaggtcaaggttggtctaagctacacagtcacagaaaaacaaaacaaatatcccaaacta
aaacaaagcagcaacaggAAAGGAATGGCGTTTGTCCC
Primer
(+)TGAATGTTCTCTGGCTCCGT
(+)GGGACAAACGCCATTCCTTT


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