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Mouse element [ mm1389 ]


Position: chr17:4,038,923-4,041,381 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Nox3 - 4930470H14Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACCCACCTGTCACTATGCATaactctagtgcctctgtcttaacttactgtattataacct
cacccaagaactctccagaactaactaccttataactgcacttagcaaaagagaggaagg
aggaaaatggcagtggaggtgttttgagcagtctttatgtgtctttgtcagcaccaaaat
gttatatatggttaatgccaagataatcaatcctgtttatcatttccatattcacacttg
gttgttttgctgtcaacaactcttgctgaaagaagcccacagccaagcttcccgctcttt
atttccaatcacccccatttctcctgaacccttgtgcttctgggagatattagatttcta
ataaaatctccaaatttacttcatacttcctgctctgaattttttttttcggcatctaag
tcactcatcttggcttggcctgagactagttccctaagaacccaggagaaccccttggga
tgttgagggtaaaggtgtaaatggagctgggtctctgtccactcaatgctaatgtgaaca
cataggaaaacatctcattagatatattccatacaaaccttttaatatgctcactgagca
aagaaatgaagaaatggaccctttgcccttgcctgtgttccctactctttgtggtccggc
aagctgtggaggtctgtgaattttcccagtgtgatgtacaatatctagatgactgacagg
tcctatcttcacatgatataggtcaatatcaccacttctgcccatatctgtcagctgaga
ggttgagttttacatgggggttgggggcaaaggtgtgcatagttaaacagccctggaatt
actgactcagcattgcctctgctcatctcctctcctacatgataatctgaaaacttgtta
gaacacagaaaaatctctttcccacagccgagctattactctggcttttactgagctgct
tgtctcagtctctccccctccccctccccctccccctccccctccccctccctctccccc
tccccctccctagcaagagattcctgtcaaatcccttttttgtttttttttttttttgtt
tttttttttttttagggaaccattgttttcctagacagcttgccagacagaggacatggg
tatctctttccagtacgtttctctgccaggatggctacaagctgtccaataaaagacttg
aagagctaacaggcatttgttactttgtttctgaagatctccaaaccacccattgaaacc
cagcctaatttgaacccctgcattctttgtactcaccaatccaaacctccgcagaggaca
aggaggcaaacacatgcccagcaatcagcaaataaggaggcaggcaattggcaagtccgc
ccacaccagcactgaggctggaaaatagcggccaacagaattcttcaaggacactttaga
gcagtctgggaagctcaacatagctgtcattaactgggaggctgcaagagccaagggtgg
ttcaggggctctgcaatcagcaatagggtggcttggttcccacaaaaacatcatgctgat
catacagcctgaaatgaaggaccatgagtggctgggagtggcgagagcccttaaccaagc
agctgacaatacccaaatcagtgcgaggggcagcaggtcacaggcaatcttttcagagac
cttccttagagaggaagaaataacatcagtattttgcaggcttctctgtgaagacatgac
ttatgtactgtggtttaaaaagaaaaaataaaaggagggtaatttagaatctcatgtccc
ttttgtagctatgcaagttataaattatagtgttacaaaatgtagccattttagttccca
gtgggtcctgttctttgtgtgtgtatttatccaattgtctgattcgcttaagtttctaac
tacagggtcttgttctggcttttccaaatgaatagttctaaaaaaggcaaagcaacaatc
aatttttaaaacccagatttactctgcttagagtcatataaggatagttacatggttata
caaaactgctccgacctggagacaaaaggccggggcaacacctgctagtgactgcaattg
tcatttttctttgctatgaatggttctctatctttcactggggtcgcagctcagcctgat
attgatctcctgggccttgttcaaagtgagatgacgggtctatttggaatgataagtaga
taaggattataaattcaccttgagaataaataaaaatagctcttctgacaattttttttt
ttacaagaaagggaagttaacctacttcataacaagcaagatcctttccttcacggcgat
ttcattagttactagcctcaaaaatgggctttatattattggattttaataatttttaag
ccactagaagaattatagattaaaaaaaaaagatttcTCCCATTCTGAACCAAACTTCC
Primer
(+)ACCCACCTGTCACTATGCAT
(+)GGAAGTTTGGTTCAGAATGGGA


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