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Mouse element [ mm1380 ]


Position: chr2:44,909,191-44,913,990 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Mir5129 - Gm13476

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAAACCTCCACTGGCATGAgaagtatgctactttgtttgatgcactgtcttattggaaa
cctaatttgctttcaacctctgagacaacacataagtttgtgtgactaatttttcttgga
aatctgagtaattaaaattagggggccattttcctagcaggagtggacaggtttttaaag
aaattcaaagtgagtgttatagttatttgctttgccttttttatggcactcctaaaacca
agtagaagggggtactgagctttgtacgggataatgtgactccccatgtaaattgtgagc
gactgcagagcacagaaaggtttatcacctaaggtgagccctcccagagctgttggagta
taaaagcattaaacgtgtgttctaactaagtcataaaaatcaataaacaggaacccccca
cctgtgcaatggccccagtgttaagttttatacacgtagtaatcgtacttaccaatgatc
accaaccacccttcctacaccagctattacccggcttatccgcaccggaggccagggctg
cgccatcctcccatcccacagagctgtctatgtgccaggagtactgcaccactgtcagac
agttctctttgtaactggacaaggctgttgcccttgctctacacacccactcaggggcat
ggcaactgcaaactgggcacctctgtttaaagagcttccatgttcttctgaaagacaacc
agaactggtgcttattaatgccccagactcaggatgcttgcacagaaggggaaagccaag
tcacttccactgacatctgaccttgaccaacggctgcaggcttatctaccaaggtttgaa
aaataagaaacaaaacaaaacaaaacaaaaccattctggagaaacagttgggtgaccagc
ttccacagcaagtagtgaagcccgtgtcctttaaaagccagaagattcagaaagcacagg
tcaccctcttactacacagaggggaacatatgctaaaaattaggccccaaggagtcagca
tgttcaccaggctacagaaataactactaacaccacacttacctcataattaaaggaaat
cctctcaccccacctccccatttttaccaataaggcagaaaatatcactgaatgtgtaac
ctttgtatcacatgcagtcttagccacccgttaacctacacatggcgaggggtggggaca
ggcttattaagtcacagccgcttgttggtaaggagatccaataacattgtggaggggtac
tgcactggggacattctgaaggaaaaaaaaaaacccataaaagaagaagaggaaaaaaac
tctgtgttttaattataatccagagataaccactccagggtaaatgagtaacatttgaga
agaacacctctattcacacacaaggcttgtttttttttcctctgtcttttaatggttcta
ttgcttatagttttaataggccagagaaacaaaagaaggccctcgttgatgactcttctt
ctctcctccccaggaagaaaaacaaaacaagacagagaaacccaggacttttatctgtct
gaggttgcctttgatagcgctcacggcatgcaagtgccgctcctggacactcaaagctgc
atcactgagaagcatagagataggataaagttgttcagtaatgagaaaattatgatacag
ctcaagtgctgtggcatgaagcgggcagaaatgggccactctgcatgtttgcagaacaac
aacgacaagaaatacagaaaatggcaaatggacctcttgaaggtgtgcctgaagttttac
tactttcagcggtgtctgtgaggacatttgcgatggatattatgggggaaatagacattt
ctagcaaggcaaaggaagtgaagcactgcacttgtgaacagctggcatacaatagataat
ttaagggaaagtgaccctcatgtataatttttaactgaagaactgtcaggccccattagt
tccaatagggcctgccagggccaagattggtttatagaagtattgtatcagcactgctcc
taaggaccagcatgaaaacataatatggggattcagtaaattcagggtttttaaaaaact
tgtacacattatttgttacactgacatcaacgcttgctgcctatgcgttcagatgaaaag
caccacggggtgaccacttccacagtaaacagtttgggagaaagcccttctgagcagttg
taaccgtgctctcaaggagcccccaagcattaaaagggaaaagcaaatggtggccatctt
atgattattctcggtggcactgagtgcttatgactctgaggccccagaaagaaacaggga
caggagctgactcactcataaaaccggccaactcaagttcttgttagaggtatggaaact
gtcagcagtcgtctgtgaaggatgtaatgagttctaactgggatgtaacatagctttcga
aagtcgcggtcaatgtaaatcatacagagaaaagaggccacctcccccaccttaggtgaa
acacagaaggtttcttggaaccagttatctcactgaaacacctggtaggaccaccttgct
gtcccagagactctctggaagcagggactcctggtagggtagaggaaggtgacaaggggc
actttcctggagacaaagacaatgaaggtggtacttgcacaaaaatgctcactttgctga
atgccttctggagctctacaaatggtggctgtatttggcatctggtagaacccactgtcc
tcagttttattgtgtaatactgtgctgtttagagtcatgtttgccttacctctgtgtcct
aagggagaactgcttgatagagtcatgttgttctttggtgtaagtgtttcgggaaagttt
gaggcagttatatcccaaattaatgggatgcttggcattctctctcggttttaatgttgc
actgatgtggacgcaatctctttatttaggtggcttgcctttactacaaatatgaaatga
tcaaggcactgcctttatacatgtaaacctatgattttgttatttggagaggcaactatt
caattccataattatagcaccttagatcaaagtctactaattggtgcacagagttggttt
ttacaggtcttagggaatattctcctctagacattatatcacaagcaatcattaggttgg
ctataaagggcttaaatactaatgtatttttaaatttgttttataaactaaacaagcaat
caatgtatattaataaacataattacatttctggcatctgtccattcatcggaccttgac
agctctagaaaacacatcagcaaaactcactgaccacaacactcaagtgagatcgccagt
gagagcctcgcaaagattccttatgcctgagccatcccaacgctgagggagggaagcctc
tgcagttgccagtgcatcttatacagatgttccaggcaaagtctctgacagacacagttc
ccactcagaacactgctttcaagtggccataaaacaagccttaatgaggcgataaaccta
tttacctttgattaggtgagctgtccggtaagatagtacagagaagcactttctaagagt
aaatatctacccaaatcaccagctgtgaccgttctcttgagagcctagaagtgagaccgg
ctgccccaggaagactttgcttatcccagagaatctctgaacgggctgacatggctttgc
caacagacagagcggcacttatgagataattttccattaccagtggcttttagaatactc
tttttctctggcctggcacacacctgtaattccagcacttcattaaacagggaaacacca
attcaaaaaaaaaaaaaacaaaaaacaaaaaacaaaaaaaaaaaaaaacaaaacaaaaca
aagcaaaaaaccaaaaaagccccttaagaatggaaaggggatagtggagagactcattgc
tagactctcagactccgtgtaactacacaacacaacagtatgctgtatgctaccttccca
gtgacctctgaatactttgtgaaaagtgagacctttttttcctccatctttgtatgcact
cagccagggtagtcatgtttgtggccagtgtttggccataactgatcttttttaaataca
cgatttgttgttgtttttaataaagacactgaaatagttatactgtggaattcaattcat
ttttcttaggtgataggagccttcctctcttcttatgaatataaatttggatatcttact
tcctttggacaaataagacaattgacatctaccaggaacactctgccatactgttccctc
cacggctggccttcctgtggtggtagttttagcatattctctgtaaagatatgttcactg
gatacatgtaagaagattcccgtcatttgatcctcaacaacaccatagcaattactctta
gcctaacaagcaaaaatataacttaaaattggaataaaaagaagaccaaagtagcagcct
gccaaaccacttgcatgcattctaaaataaagaaaaaatatgaaaaaaaggtagcttatt
cagtgtcacttgtacatatttatggtttaaaaattagtcaaagtttatgtcccgaggttg
cacctacagaaagccagatgtgccttctgcacgtgacctaagataggcccagagcaacaa
ctagataatttctcgctcttcctctataccgtcgattgcggcggctttctgaggtgagag
aaactgacagcactaactctccagggcagaactttccagTCAAGTGGATCAACGGACTGA
Primer
(+)agaaaCCTCCACTGGCATGA
(+)TCAGTCCGTTGATCCACTTGA


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