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Mouse element [ mm1378 ]


Position: chr9:21,361,174-21,364,364 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Carm1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCACACCCGGCTAAATGAACattttgttttattttgttttgttttttttttttttaagat
ttatttattattatatgtaaatacactgtagctgtcttcagacacgccagaagagggagt
cagatcttgttacggatggttgtgagccaccatgtggttgctgggacttgaactcgggac
cttcagaagagcagtcagctgctcttacacactgagccatctcaccagccccccctcctt
ggttttatacatgcagaaggtgaatggcatctgtgttggatcccacagcttgcagctctg
atgatgctctccaccccgcttctcccactcctcaggctctgatgacacaagctacttaca
cttgtggcttggagcagggctcccctgaggtcccatccttgttccacatcagtgactggc
caaggcagacagttccagagttcctcaagcaaggcgcctgtgttggctgcactgctgtgt
tccactgtcactacaggcaacagtggcctccctctagcctgcaaaacatttgaagccata
tctggagaggcagcctttgagtctgggtgggatgtgggccttctaactcaaacatcctgt
gctcatggagtcctcaagggcctaatgggaagcctttctggctgcctagcagccccagga
catcctgtttctcccagagacaaggactctggcctacagctgatagaaactgctgttcca
tacctgactcccacctctctaaggtggactgtgccgctcctgcctctggcagcttaatct
cagcagctactgtgggctggacgttgaggtccctgagggtctttctactgctttcccatg
cttcatctcaccccagcctttcaggcctccctctgtaagtatcttgtccactaaagacct
caggggtgctgtcaggccattggtgccattggggtcaccttatgctaacgtagagtcagc
cctgggtgctgtattgaactgactggtaaaaccaagagtagaaccccacctaaattcctc
caggggctttgtttgccctggctcagtagtaaatcccctgcttaggaataccccaccccc
acccccaagtgaggaactaggcatgcacaaagccttatgctccatctatacatccctccc
aagagattacaagtgctatgtgaaactaactcccatgtcagccctttggctttaagggcc
ttccaggtaagctatgtctcggagtcaccatttgatagataaactgggaaatatagtgag
ggaatgaaggcacacctatgctgtctttacctttgctatgcctacaattttctctgggcc
tccttctccccattcattgtctcaacccactgtgttgagttgggtgctttgtgttacccc
accctacagcttgcccacaggcagaaggtatgttcatcctcgtgacaacactcgaggctg
tgactggtttgatttttctagacagttttaagtttgctcagactgactccagagctactc
tggcctttggccatgatggcgggttctgggagtcctttcctaggtaagggctgcctggag
tgcagcctattccagctcttccatacccactgggaagagttctgttgggtgtgctgttgg
ctctgggagaagcgtgcgtggaggagctgagctgccatgatctcccatgtatcagggtcc
aagtcaggtcacatagtagccagcgcttatgcctggttatcttctatgtacagggtagca
attccaccaactcaggagggtgtgtcagacctatcttccctgtgcactgtgaccttcctt
gggtcagtcactcagaacacaggcacacctttgtcccatttgtcttgtctacacttcctg
tcatgtacattcctctgggcatttctccaagtccctggccatggctgggctgattagtgt
tcactgtcagcatagagctcggtgggaggctaggctgaaagtagccccttcctggggtgg
ccacggtgcttactggacttgtatttccacacttcttttaacaaacttttagtttgttaa
aaaaatattaatcatcatgtttgtaaattggtgctgtgggtgtggtaatttgtgctgtgg
tgtgcatttggaggtcagaggacaaactttgtggcttcatttctcccctaaactctcatc
ccctactgaatctctgcctccatagcactgggattgcagatgtttaccaccacaccattt
tttcttttctttttttcttttttcttttctttttttttccgagacagggtttctctgtgt
agccctggctgtcggaactctgtagaccaggctggcctcatactcagagatttaccttct
tctgtcttggagtgctgggattaaaggcatccacaagtcaaaacctacttgttttcgttg
gccattcatttgtacattcatatagacggtattagcttttgtggtgctctggacttccta
aactgtatctgaggatacctttgtgcatgtttgctctaagggccagagaagagagtcaat
gcttcacctggcaaggacagaagagcctagggtgacctcatagtcctcagatgccccagg
gcaggcaggctgtgctcacagctgcttcccagtctctctgagacagcaaatcatctgcct
taggttacaacaggaggaagatctgactgaggtcctgggccagcctctccatgacagtgg
gtgatctgcactggtgacagccatcatgactacttctgtattaaggagtggtgatggtca
cttttgcctctgtcacacagcagaggagcttcgtccctctgcacctgcttcacggataga
ctgtgaacagcttactttcaacaccacccctctctaggctgcctttccttggtggaagtg
acagtttcagaattttgatttttttttttaaagatttatttatttattatatgtaagtac
actgtagctgacttcagacacaccagaagagggcgtcagatcttgttacagatggttgtg
agccaccatgtggttgctgggatttgaactccagaccttccgaagagcagtcgggtgctc
ttacccactgagccatctcaccagcccccagaattttgatttttttaaaaaaatacaaat
attataagagagactctcttctctggcccttagaccagggaacttcctttGCCTTCCTTA
TCCTACACAGC
Primer
(+)ccacacccggctaaatgaac
(+)GCTGTGTAGGATAAGGAAGGC


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