Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1367 ]


Position: chr9:95,713,136-95,716,028 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Pls1(intragenic)

Timepoints:
e11.5

Reproducible staining in ear region.

Expression Pattern
hindbrain (rhombencephalon) (5 out of 8 embryos) 
midbrain (mesencephalon) (3 out of 8 embryos) 
other (7 out of 8 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 5

Fasta sequence
CTGGGAACTGAACCCAGGTActctacaagagcactgggtgtgtttaaccactgagtcatc
tttgcagctcctcattcccattcttaaaaagaaatgtatccgtaccgcagaagaagttca
cactgagagcacggggccgttccatacagcctgctgcttggaagtggtagatgcccacac
tcttttactgatgagaagaacatttaaaaccctgaggatcagtaagagggacttttgggg
ggggcttaagacatggctcagtggttaagagcactgactgttcttctaggggacccaggt
tcaattcccagtacccacatggcatctcacaattatctctaactccggttccagggatct
gacatcctcacaccaatgaacataagattaaattaatttttttaaaaagagagggacttt
tggaagaaacaaatcagcttcctactttataaatgagcctaaaaaatagaaagcatcttt
tcaccatttgcctcttgtggtttactggactcttccgctcttctgtgcgttgctggggag
aaccgatccagaagatcatttagaaggagaggaaaaaatagaaaccttgattttttgttt
ttttttttgaggacagactcaaaaatagccataatcttccactcttttaagaattcaggg
gctggagagatggctcagtggttaagagcaccgactgctcttccaaaggtcctgagtcca
aatcccagcaaccacatggtggctcacaaccatctgtaatgagatgggatgccctcttct
ggtgcatctgaagacagctacagtgtacttagatataataataaataaatctttaaaaaa
aaaaaaaaaagaattcaggcccagaaacactaagtttgagattaaaagtcaacactaaaa
aggaaaaaacaggccagtcctcaacaagcacacttgctagccgacaatgtgagcgttctc
agcacctttgtggtccaagagctgccgagtctcacagactcctgttaccaggatcccagc
gccagagccttttccagcggggactgcgccccgtaaggatgtgaactttttcaaaaggct
tgctaaggctacaccgtgaacaacatttgtagctactcaaagtaacctaataaggggcat
caaatatcatgctctgcgtggtaagctgatctaaactggggatcataaagggatgttatt
ccccccagctccacaagaacacaattgagcgactggctccttcattattagaggagctgc
accaggatccagcctttgttgaagtctgggcatgacataggaaaagcaatttggcttcca
aagaaagccccgaggagggcttggcttggttttgttacgttcttttaaactgtgtgacat
ttttctatggtgaatcactttccagggttagcttgtcatgatgtgtttggtctccctaag
aggagccacagagtaactggacactgtaactcatacagaaatgctctaagtgtctgaggg
cttcccaaagcagagcaggtgggtcctaacttcatcccgaggtgtcagccttcacggtcc
ctgcgcataagagcatgcatcacttctgaaaggctcctcggctttgagaaggaacaaggc
ctccattcttccacactaggacctattcaaactgccgccggctgtatcgctttccaaggt
tccttgatatgcttgacatacaccattcaagacccgctcagccttacgtgggctgggaac
tgctcaatttctgctttagcaagaaaacagcccgacgcacccagggtgaaaggtgacatg
ctcacacagaaactgtttaaaaggaaactctttcaaaaaaaaaaaaaaaaaaacaaaaac
ccacataaactgctgtccccaagtcaatgcaatggtgaaatctatctcctattaatcctg
gcttttcaagacttagagaagccaaatgcaaataaagaatttattacaatacagataccc
tctcactcctagatgcccagactcaacaccacggcccagcactgcacgttctcagcattt
ttaaaaacatagccatagagtctcttcaggaaaaaaaaaaaaagagttgttcttatccac
aatacaactatagactttacgagacatcactggcctgaaagccttaggcttcaaagcaac
agtacatataccttccagagggcgacaccaagtgaatatttagttacttctgcctttctc
aaatagttcatacccattcctgaaaagaaagtcaaaatccaaccaagaattatgtgtaat
ttttaaatccaaccctgaaaaaacccaaagccctccttcttatcaacctaagaacggtgt
gaccatcatatcaaatattctctggactgattatgcaaaataaccccagagcaaggaaca
gcttgctgagaaattctgtgcggcagttttaactcaatttaacaatcacacagaaaccac
cagcagccgcgtctgagtcactgatcctatcagaaggctagagtctgcatacacgctctg
catacatacctgcttcctcaggtcttacttagcgcctggcagtcaggggtcctgagaaac
aaactcagaaacttgaaaatccaacctgtcttgagccgtgcctgtccttggatggtcatg
tgcaaaagtcggacacgcagcttgctctatgctgaaataaatgttctgcctactactaca
gatcttaatctcaaaagaatttggcctaggtagaaaggccaacctggaacatgggtgtgg
cttggaactttgaagaactatattaagaggcaaaactgtagatgtcatcaccatttctaa
tctacaacagcctagagcacttaaaattcacaatgagacctcatctcccgggaGGAGTGA
AACGGGACTGTGT
Primer
(+)ctgggaactgaacccaggta
(+)ACACAGTCCCGTTTCACTCC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.