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Mouse element [ mm1365 ]


Position: chr3:63,673,741-63,676,349 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Plch1 - E130311K13Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGTGACAGTCTCAGCCTCCTttctttacttgtaagataaagtcaccctctgcagggtcac
acgaggagtcttgagaagagcgccatacaactactggagccagtgggtagagtagcactt
gtcacagacttacctttaaagtaatgatacacattaaatctgttaccaaaatgagggatg
aaatccacaatgcgaaagttgaaaataaacagtagtgtgtttaattaagcatcactcagg
tctcatgaaacctttgcatctcctggacttctgatggacattgctctacaaattccaata
cccccgaaacctttggctcacaaataaattactcccatgggaatatcttggtaggaggat
ggacaaagcttatccctgactatgagacactaaacaagaagctatagcctggttaaaggc
aatggtctaagacaattattatttatcaggaaaatgacctgtattaataaccctctgttg
agctacagtaacccacccagcagacattctgaagtgtagcaaggttctctgttctctttt
cctgtggtctgatacactggttaagttttcaaaccccaaatagttacaaccattgaaaag
gtacattttgggagtcaacaggagtagaaaggctgagtggtaggaagaagaacaccattg
ctgttttttgaggaagttcacgttgatgaaaactgcaggtcacggtctggtggaatttta
agacaaactcaagctcttggttcagcccaacaattagaccatacttgcatccaaaacagt
acaatgaaagtaattttccgaaagcagagtctcagctacataagtacaacagctcaccat
gaaacacgcggttgtccaccagaaaatgtctgcggtactgcacacagttcctcttctcac
cgttccagtagttcattgttggaagatgtctggcacagcatccaaatgaaattgccctat
caagagagacagaatgagacagaaatgaagaaaagagcaggcacacgctcacccagacag
cacattgccatgtgttgcctagcactgggggcaacatacaaggctaaaatgtagaccagg
actcctccagcccataacaaacttcccacagaacttccaagaacttgaatgctgcttttt
ttttcccccataccaaaacaataactctttccaacaacatcatcctgcactcagctactg
ctgtctgctgaggaaagcaagctatcattaagcaggtttcaggactatattttgtgttcc
aggtctcaattgcattctatcaggatccaaaacagtcaatactaatcaatttccagaggt
ctcactagcaggtgagctattattctcaactcctgaattttgtgttggtgacatccgggt
aggttatgtaaccaactcgcaaaatgttagaaattattgcagagtctaattgggcacaga
tatgccaaactataacaaagtttacttgccttcttttagttcattggaggtatttattta
gggccactaatccttggatccacccaggcttacagatgtaactagagctggccaggcctc
tagcataatgtgctcacagaacctgcagagattccagcctctgcagagaccaaacacttg
aaaagcagagatctgagctgatgaattaaactgcaaagccaatgtgcatgaccctgaaca
aggaagcctttgttcacaaggtttggctagtgacgtttcagaattccaacctcctttcgg
ttcacatcacaatgctggaggtgggggggaacagtagcaggaagaaaaaaaaaaaccaaa
gaaccaaaaaaaccaacccccccccaaaaaaaaaccaaaaccaaacaaacaaacaaaaaa
cataacaaaactgcaaggctggcaagaagcaaaccccacaggtggaaaacagttttgtca
tctgtcctattgcaacagtctatagttttgtaaatgtaccccagtggcttagtgaaaaag
gtaaggtatcccagtgggataaggtgtcacactgggacagctagtggaggctccaggagc
ttggtaagtttctccttaaccttccacaacggggatcttatctaccgttcagactgcttg
ctgctccacacaatcctgaatccctccccttcttttcacttcatccctgccagcttagaa
tgatgctcctgtttcttaagctgagggggtaaagaaaagcatgtgggaccacggagagaa
atgctgcagaacagctgactacagaaacaagcctacctttgccctccaaagccaacatct
catattatatcccaaatatttttagatgtataaataatgtagtaaagggtggagtgtgcc
ttataaagcacgtgcttagaagtacagtgccctgaatttgatatccagcaacacaagtaa
attcaccaaaaacaatgaaatgttattatttttttttcaaaactgcagtactgaagtacc
cccatgttctttcctgttctggtatcctctttcctcattgcaaatctctctcctagaata
actattttttaatattcattattccagcattttacctaaatacacaattttgaagtcctc
tgtattatTAAGGGCACTACCTTTTCCAA
Primer
(+)GGTGACAGTCTCAGCCTCCT
(+)TTGGAAAAGGTAGTGCCCTTA


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