Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1364 ]


Position: chr6:112,763,556-112,766,918 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Srgap3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAAATGTGCAGAGAGCCAAAcgtgcttgtgtgcatacatgcgcgcgcacgcgcacacaca
cacacacacacacacacctttcccttctgctgacatgagattcctggagaagtccctgtc
tctgtggggctcattgtttattggtttgatagattgacagacacaagtatctctttggaa
catgtttagtctgatgagccacgtacactcctttcggtttttgagacagggtctcactaa
gttgactgggttagccttgtattcactctgtggcaggagctggccttgtacttgaactca
tgatggctcagcctccggagctgctagatgacagatctgcaccagaaggtgacatgggtt
tctggaatttgaagtgctgccatttcttaggcaggagtccccaaggctagggaatggctc
agtgcttaagagcactttcatctcttgcagaggatacaggttcagttcccagaacccaca
tgaatgctcacaactgtctgttaaacccattccagagaatctaattccctcttctgcctc
agcaggaaacccccaccaagcactagggcccctgagtagtcgcatgccaccatattagga
accactaacaggcttccattcttgagtggggtctcagcatcatatcttacattggcattt
gacctgcctcggctctttcaagtggtcccctctgtagtcattgtaccagacccactttcc
agatgagaaaactgagacttaaagaaactgactagagtggtcagtgagacagtgcagaga
cagactctaaaagttctgtcacactaatgataatgggttaaagccacatttggcctttcc
ttgaaatggctcaagactttggcctacctacataaaatggaatgcatcttcccaccattt
gtccaaaacttagtccagaagtggttgaggtaagtacaggaactctccctttataaggag
cacagggcttagttctaagttatatataatgtggtcaaaacaatggggccttggtgggct
aaatcagccaggcacacttgtccctgacactctcccagcccacagaggccaggtcacttc
ctttgttctacaggacaggcctggtaacaaggcagccaggagctcagctgtggacatttt
tcattattttccaccctgttaacctccatcacaagtcaggctgctgtcagactaaatgag
aactgcaaagatctatctcacttgtcccccggctcaactcaggaaaaaagagccttcatt
tcctaaaggccttgacgaccctttctctctaagtcatccccacccaggaaaaggctctga
cagcagcagcagcaggcggggaccagactgggattaggactccaaagcagcagacagcta
acgcttttcagctggcctctgtgaagcactgtgggattttttttcttgacactgtattta
cctttctaattatgtttgcttatgcaaatattaaactcagaccacatttcctaaacacag
catcaagtggagatgcgtagcatattgtgcattgggaggacacgagccagcggctacagt
tctgtgggtatcatcctcaagacggacgatcagaccttagagaggcaattgtcccgcaag
tcagcagcttgtcccctcatgtgtccagcaatgctgggccaccagatcactaaaatggta
cctgggaagacgaactgagctacaatgtgttacaatcgctgctggcctgggttcacagcc
agctctgagcaaggccagagcagcctgtactgccaaaaccctccagggtgtttccaagtc
attttacaagtgagaaactgaggcacaggcaacttaagtcataagcttaaggatgcatag
gtcacaggagaaagacttatcccatctaacaccagctgagacagccagtgagcatttcac
acaagttggaaatcagggcacaggcttaagttacaagctgaagatacacaggacatgcag
ggtttttaaaggatgctaccaagtttgttttctttcttaaacgtttaggaatctaccttc
ctactgaggtccttccacacaggagagcatgtttgaacttcatgtgggccccaaggagca
cctggtttcagcctcactcaacagactgagaggacaaggcaacatgacacacccatttta
cagaaaatccagttcttcacacatttacacagaggctccattgtgccagacattgtgtca
gaagctccggacaaaggcttcaggggacataaaaagggaccgttctctttacccttggct
cctgcatagttccctgggtaaaacctttttttttttttttttttttttttagcaatgcgg
tgttccaccgaagtcttcaaaaatgtaaatcagcattcctatcattctcattgtggaaac
caatcctaagtgactagggatatgggaaaaagcgcacagcggagctttttgtaacagcag
aataatggctatgcaatctttcaaaacacaagtgaacgttttcagcgtgggaaaattttg
acagagagcattatataagcctggtaggtgacataagtaggcagcaatgtcaaatatgtg
gtatgatcttacacagggggaaatgtgtatgcattctagaaagtacacaaattataaaca
tgcaaggaaatgaatttgtacaggtatacataatctcttaaaatctccaagtgattgact
gataaaatttctgctcgtttccgttttggggctctcatctacctccattttcccagattg
cacataatacacgtatactgcacacctaggcacctaaaggtttttattcctgtggctatg
ggtgctaaggtggctgagtacacacagtctttcaaaggcaaatgcagaggtcacatctga
gccaggacagcacagtgtagcccttgccctctgtattattcaacacaagccatcctggtc
ccttgtgcccaagcaacatctcaccatgacagtagactattatcatggctggtctgggaa
agagacccagggcagatagggcagctcacctttttgaagagtctgatgacatcttcactg
atctgggagaggcggacgatgacattgttcatgaagatgtcgttgagggtggcatggtct
cggctctcccgccgagtctgatgcagtaccagataccaacagttcacgggcgagaggagg
tattgatccttcctgtgggaaccaagacagctcaggttggcttcatgtcagttcacctgg
tcactcactcttgagtctcatagtcactatcaaagtcaatcttactacacctacggaata
gaactgcggaaacaggccagagaattaaggtgatattccacagTTATAGAGCGTGCTGGC
CTT
Primer
(+)caaatgtgcagagagccaaa
(+)AAGGCCAGCACGCTCTATAA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.