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Mouse element [ mm1363 ]


Position: chr1:129,651,379-129,655,643 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 2900009J06Rik(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGGCAGCCTCTTTTACAGTtagtcaagcctatttggctaatgacaggaaactgttggac
agagtctagaaggaatgtaacacacacacacacacacacacacacacacacacgggtgaa
gagctatcattcaactgcttagtagaaagctgactcacaaagaaccagaaggaaatggta
ttgtctatcaccctgtctatcagaagctctgctggaaaaaacacccttctgtggatacaa
tccaccatgctcttggaattcccaggaggcctggaagctaggcaaacctgtgcttggaga
gcagtgaggggcagaaggagtctacagtgaggtcctcactgacaatctagtctctagctc
tggattcccaactagctcctgggggttaaagcatgagacatgaaccaactgctgcttcta
ggagtaggaaacacttaaagtaattcacatccacccaataatttttcagtcttagctccc
aagaggtagcagaaacttgacgggattaacagtaacattacattaacatttagtgagcta
tacctaggcaccagatactctcacagaaccctcaaaataacccattgccagaagccaacc
atcactactgtgtaaactgataccatgtccactccaaggtgtagttgagggaagggtttt
attatagatgtgagagagagaacaatgtagatgtgaattcaggtagctatgagccagagg
catctggaagaatccagaacagagaaagtaacagactaaacatagctagcatactggatt
tagccatgagaggagaaggcaatataggggagagcgaaagatgaagacaaagagaaggaa
aatgagaggctaagactaagcagcaatagaatgagaatgagaagccagggaggggagctt
ctaagctgaagaaggaccagagtaagaggcagaaggggaagagccaggatgcctgcaagg
actctgaaatgtgtaacaggtacctgtgatactgagagatctgggggcactctggtatgc
taatggctaccacagatagccctttgtcccttctgccaatggtagaggagagcccggctt
cacagtttcctgaggaatgttgacttttgtctaactggcagaatttgaacccggcaatct
ccctaagctcacagatgaggaaatttagagagctgactaatatttgctgactgcctccaa
ggtgaagtcataaccaggagctttactaatgtcattatttacaaaactgcacaaaagtcc
tacaagacaggaaggaacgtcctctggtgatacaacacaggctgggaccaaacaatttcc
tcaaggccaagaggcagaaaatggcgagagctgtctatcctgcccagaagcctaactcca
cacatccaaaactgaaaggagagaggctggggacttagctccggggtagagtgcttgcct
agcaagcacaaggacctgggtttgatccttaatattgaaaagaaaactgaaggcaaataa
atgtcactggagagtcagggccaggccagatgcttccagcttcttgggctcttatccaag
gagctgaaagtaagaactcatatagatttgcaaaataactctattaggagtgaagggcta
ccacatgacagtaagtattagctcatgtttattttcttgctgtgagtgaggctgcattga
aaccacggaactggactgatccatagtgcctggaaagaaaaggttaattataaatttgaa
gctggcatgtaacaatctctagggtagtagagaatattcaggggtattttggggggtcca
aagctgctgtggctacctctcaggagacagggaggagggactactaactggcaactgcca
gtgctatctcttaggagcagagagaaaaagagtgggcgggaggggggtgataagggagtg
gccagttttaaagggagcatggtagctgcaaggttaaggggatgaagaacttgtaagctg
gaaaggcctgggagcttagggccagaagagcccagaggctttgaaactcgccatagctac
aagctaaaaaggactaaaggggcctggaggtcagtgtaggttttgatagtaactagatgc
ctcagttgcctgagattgaaagaaataagggaactagctctttgagccagagagaaatat
aggctctgagcgagcaatgggggcttttatctgtttacccaagatccttcttcatcagcc
tgaaccgagcctagactcatcttgagacaagtggcactgccttttggggtttgggaccta
acacttactgctaatgtcccttcccataatgcattttattttaattatgtacctgcccat
cttaagatgacaaatagaggattctccctaataggttactaaatgccacagttttgtata
tgtacttcaaaccagttcaggccagataggtccttctgttcttcctagctggatatgtta
agaatacacttgaaagccaggcgtggtggcgcacgcctttaatcccagcatgtgggaggc
agaggcaggtggatttctaagttcaaggccagcctggtctacagagtgagttccaggaca
gccagggctatacagagaaaccctgtctcagggatgggggggagggatctaaatttgatt
gtaaccagggctggggaagcttacaacatcattcaaagatgtcagttgatgtaatctgat
gcaggtagggggcctaggagttctgaggttgctaggttcactgtttgaagaagtctgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgt
gtgcatagcatgtgcaagcaaaggcttggactattaagtgcattattacaagggcaggtg
tgtatgaccccaaccaaataggcattccaagctaagctacctccagtgcttgcatgcctc
atcaggaccaaagccaggctctttgtccgttcgatctcttagactactctccctgaaata
ccaaatagggaccttcagatgagttttcttggccaagcaatgccctatagacatttgaat
catttctggagcagaggggccccatgttatacatcactgaaaattccccaactcaactgc
cattctgcaggtactcctgtgactgaaacgtgtcactaaacctttctttctcacaacacc
aagtaactgtctcctcttttaggaatgccatcggagaccaccatggccatttgctccatg
atcatgggtggggtgtttgagaagtttcccaaactcaaagtgtgcttcgcacacggaggt
gagaccctatttgtatcagttcataccggcctaaggaaatgcctcagtgacttaaggcta
catcttctcacggctgagcctggcaacctaagagcatagtactgatggggttggattctg
gggagagctccctcctagcacatggatggccaccttctccctgtgttctcatgtgactct
tccctgtgaatacatgagtgaggagaggatagaggacagtatttgaagaagagaaatggt
tctggtcttttcttttgtgtgcatggttaacatgtttatttgtatatgtgtgtgtgtgtg
gaggccaaggacaatgttgggtattgttccccggtaccatctgccttttttgtttttttt
ttttttgttttttgtttttttaaacaaggtctttcagctaggtgacggtgacacatgccc
ttgatcccagctcacctggttattttcttactgtgagtgaggctgcattgaaaccacaga
actggactgatccatgctgtgtggaaagaaaatgccatgtggctatctctagggtagtag
agagagaataaccagggcattttagagagtacaaagctgtcatggctacctcagaaggca
ggaacaagcaggtttctgagtttgaggccagagcaggacagccagggctataaagagaaa
ccggtcatgggacccaggggaaggaagggggcgggggaggagggctctgcagggagggga
ccagtctcactaaacctagagcttactaatttggctagaccgattgattggccagcaagg
ctggggatccttttgtctccacctccccagagctgggattacatgtgtgcgcctgatgac
tttttacatacatttgtcatacaaagtcagatccttgtgtttcactgcatggcggctcac
tctaccaaatgaactatctccctatcgatttatttatttgcttggTTGGTTGGTTGGCTT
CAGTG
Primer
(+)agggcaGCCTCTTTTACAGT
(+)CACTGAAGCCAACCAACCAA


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