Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1357 ]


Position: chr1:31,158,444-31,161,289 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gm13363 - 4931428L18Rik

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTTCTTGTACACAGCGAGCCttttatgttttccttttcttagtacaacaaaattatttag
gacactgtgaaataacagggagatagtgaccatctgattggcacagtgtcttccctgtaa
aaagtctgccatgtgcctagcaacttgaagagactgttgttcatcttggcaaatgtctgt
gtaaagtgtgactttaccatccgaggtaacattttaatgaaaaaggttcttctttgtgaa
ctgggaaaaatccaaggactgtggcttgctagagtctttcttgtaggatggcatctaaat
tcaactggacagccaagttggatttcctgtcttgccttatggatacaagccatcactgaa
ctatatatagctagagcctcacacactggagtcaaccagcatttgttatgtgactctagg
agggagttccttgaagaattcccaaaggttaaagttataaataaataaataaatatttaa
aatttgatataaaattaactcaaatgtttacagtttttaaatgggctaaaattatgcccc
tgaaatgaatataccaggagctatttgattctccaaggtcattaacacaaatgaccagag
aagtaagcttaagaataatatagctattgtacttaactgaatagtaaattttactaggtg
taacttctcatctctacgaaggcacttaagattcttttatatgcatttctgactttcaga
aacatgaaacagcccaagagcatcaagctaggtaaggctgcagaagcaaataccccattt
tgtaggctgcagttttaattctaaacacagcagctctattttcttggcactcagagttct
ggctactcagtccaaatccacagctcagaccagaacataaacagagagactcctctgagt
gttcacggtccatgtgagaaatccagccttcatgctcagcagatattccattgcccaact
gtttataataatagaaaggtggctttattaggtaaagtctgcttggtgctattaaatggc
aaagcaaaacctgctgactttcattttcttcagtaagccgagtttttcttgggtccaata
aaacctatcccatcattttaaatttcaccattgattgagaagccccaaaagcatgttaga
actgggtcagaactagtagagtagataatgactttcataacagaaggcaattcattcact
gaacaaatattctcaaaggtctgtgccatgtatgccaagctttctaagaggatggagcag
aggacaaaatccttgtctttgtgaaaatgacagtatatcacagcagagagaagcaggaaa
cacacacaggatgagaaatgatgtaatgtccgaaaccagggcatagcaggcggaaagaag
aaggtagagagacacaggagcagctccggggtgagtgtgtacttgctgttccagagcaag
gggccattgctggccagagtgtgagagaaccacagctgagtgctgaggctgtacatgttg
tggaccattgccaggattcctgctttcactcggagtgtgaagaataggctctggcagctt
ttgagataatgtgctaagaggcttcagtatggatgtcgcgtggacgacagacaggtgggc
tatagtttagagatcacggtcagcaggccaccacaggaatgcaagtgagagtttagaaag
ctctccaatactaagagtattttattaaaatatggctctcttttgtgtccctgaatatgg
ggtatgtgtgtgtttggctgttcatggctatgcgcacaaagagctcagagaagagcattg
agtaccctctcctagcgttttctgatttattcctgtgagccagtgagctgcaacgatcct
gctagctctactccatagtgtattgtgccctgcccccagccttgagcggataaatagacc
ttaagtattttgccacagtaggaccttaaccacttaggtggagtcttctgccttgcagca
cctgcaatttcctgcaggagcagactgcctgctgagcttgctttgcaacataacccagct
gaaacaaagcaacataatccagctgaaacaaaggtctgtgagctctccatatatgtgtgt
atgtgtatatatatatatatatatatatatatatatatatatatatatattgctgtctta
gggttttactgctgtgaacagacaccatgaccaaggcaagtcttataaaaaatatttaat
tggggctggcttacaggttcagaggttcagtccattatcatcaaggtgggaacatggcag
tatccaggcaggcatggtgcaggaggagctaagagttctatgtcttcatccaaaggctgc
tagtggaagactgacttccaggcaactagggtgaggatcttatacccacacccacagtga
cacacccattccaaccaggtcacgcctattccaacaaggccacaccttcagatggtgcca
ctccctggtccaaggatatacaaatcatcacaagtgctaaatattaaactttgagccttg
atcagaaacctttgtcttgacttcatccttctctcccacccccaacccctgtcctttttc
atttccagcctccttttcaggcaaccccgttcatccatgactgctggacagctatagtat
aagactttgccctgcttgttatgtggttctgggaccagactgaaggccttcatggttact
gctgggggtagtcttaactacagagccatttctccagccccatatctattcttgtatgca
atgtaatgctatgggatggctcagccgtattccccttgaaaggccattaggagtcagtgt
ctactgTGAGGAAGCAGGAGACAAGG
Primer
(+)CTTCTTGTACACAGCGAGCC
(+)CCTTGTCTCCTGCTTCCTCA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.