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Mouse element [ mm1355 ]


Position: chr1:75,401,830-75,406,059 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Speg(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGGCCAGGAGATAGTATGGGcttctggccccccaaacaatgagcacttacgagtactggt
tctcaaccttcctaatgctgtgaccctttaatacagttcctcatgttgtgctgacccccc
cccccataaatttattttgtcactactttataactgtaattttgctactattgtgaatca
taatatagatagctgatatgcagactatctgatgtgtaacccctgtgaaagggccattgg
accccaagggggttgtgaccgacaggttgagaacctctgacttagaatgatacctgggac
agaaatgctcctaggttccttgttcccaagacagagcaaatccactgagctataacaaac
aaacctgactcgggcatctccgttcttgccctgcaagctgacaagcccgtgtctttggat
aagtcacttcccctgtgtgagctttattgtatccctctgtgaatggggatggtgctaata
cctaccaggcaggagggattggcaggattagtgagatcacctctacagagaacaaagccc
tgtacaagtcaaaggctggcaactcaggatgccagctgctgttactatcaatggcattgc
tggcctgatcctgttctctgtgaagagcagaaatgaggacacctgcctctggagtagggg
tatagagtgggaccaagaggcacctgctctgggtgacaggtaggacagagtgtggacagc
atgaaccagacacagagaaaagtctgggtagtgggcttatctttacaaacctcagagtca
agctaagtttcatcttgaatgaatatgatatggtaaaagcttcatcaggtcctgtgctat
aatgtccccagcccaccttggcacgctgctgtccatccttgttgaccccctgcctcttag
gaagaaggcctggcctatgaatcttgtccagctgcctcagccctcacgctgagtctttgt
agggctcagttcaagctcccaaggctggacctgtgagattaggcgtctgggcctccacag
ccttgacccagtgctgcccacttcctcgcagatgaactgacctgcagtgcccggctgacg
gttcggccgtcgctggcgcctctcttcacccggttgctggaagatgtggaggtgttggaa
ggccgtgctgcccgcttggattgcaagatcagcggtaccccgcctccctccgttacctgg
actcattttggtatggttcaccactctgaatatactgagaaaacatcatgggtgtgatag
ggtgtgcccaaagggcaggtccctctgccttagtagatttgcatctatgtcctctgcccc
ccaggccaccccgtgaatgagggtgacaacttgcggcttcaacaggatggaggtctacac
tcactgcacattgcccgggtgggcagtgaggacgaaggactctatgaagtcagtgccacc
aacactcatggccaggcccactgctccgcccagctgtatgtggaggagcctcggacagct
gcctctggccccaggtaccacctaggaccccaggcgctgcctgaggtgcctctgggggac
ccttaccctgagccaggagggtatagctgtgcacatctgggtagccatgtggttcttgca
gctcgaagctggagaagatgccatctatccctgaggagccggagcacggagatctagaga
ggctgtctattcctgacttcctacggccactgcaagatctggaagtgggactagctaagg
aggccatgctggagtgccaagtgaccggcctgccctatcccaccatcagctggttccaca
atggccaccgcattcaaagcagtgacgaccgacgcatgacacagtgtatgtgaccaggaa
gggacccagcaacctcttggctttttgaatcctccccctaggactccctccaggtcttct
attcgtagtctggtttgaggtggaagggcctggggaacagagcctttcggggccctgagg
tcagcctgtcccttcttgagtccacacagtgccatctgctgagtcacccgcagtggctgt
gttagcatttactgggcaggcggcatagcctgctgctgaccgacatggggactgcaagca
ggttgcagaatccagggtgcctttcctcattttttaactgtgctgtgatcagagtgaaac
cagctaaatgtacagatacacacacacacacacacacacacacacactgccgccactgcc
accaccaccccaaagcagggcctggtagatcgcaagcggtcagcaaatgatgaatcttat
tacagtttttattgccactactctcactgttgatagagcagagctgccccccccccccaa
gcctgagaaatccagtggaagggctggtatgtgcagggtcttgctgaagggaagtcgatc
cacagtcgctggccaggaaataggaaagagagagtcaggacttgggttggagtcctcttg
cctggttattttcccaaggtaacactactgtgttctattgtcgaagcaacatgaatctca
tgtgagctcctcctacctctactcgtggtggctctcttctagagctgcccctacgagccc
cttaataagtgctttctttgtgattcagcccaagtcctgaagacctggcagggacagtct
cgccttgccataggtctgtgaggcaggtactctgatgcctgtctacagatgggtaaactg
agacttagagaggtccagacatttcctcgaaggtaaggaaggacctgctgacccaagccc
acttctcaaggcctgctcttgactcctgactggggatgtagctaggttggcaaagcacat
tctcggaggcctgggtgtgatctctacggctgtctaagctgggcatggtggcatgcacgt
gtagcgccagcatttgggaggtagagaaaggaagatcagacgttcaaggtcattctaagc
tacacagtgatttctgggctgctctggattacatgaaaccttgtcaggaaaggagaggga
agggaagggaaatggaggggaggggaggggagggaaaagtacgggagagagagaaatgaa
ggaagaaaagagaactagactgggtttaatcactcacaccccattctctcaactccaccc
tcatcccatccctagtaccagtgcagcagctgtagctgtcatcgcttagtcacagacctt
cccgtgtccccactggaggccctgggtagatgtctgtctcaggatcagagttaccgtctc
ttctgtgcctgtgtctggggtcactgacagcctttggtgtttctgcctctttaaatagta
taggcagagataaatgagtggatagccattcccagtgagataagtgatagaggaaggcag
tgtttggggacatccctggtgtgaaggagaacagcacaggccaccacttcttcatgtcct
gcccgatgacagcatccttattattgatggagcagagtgcaaagaaagagctttggaatg
aaatggaactcaagttcaaaccattgcttcatcatttaccataccgtgtaaccttggaca
agtcaattaatgtctctgacctcctgggtaaatggggatcattttgtagagttgctgaaa
ggattagggtacctggcatcggatgaacgcagagcaggcaactcttattataatttataa
tgtgacatatatttggcacttactgcatgcaaagcattgcgttgtaagcggaacaagcag
agctggacaggagctgtgactcatggatgtgagaaggagaaatctctaaagtccctggga
cctggtacccagcgatgagctttaagagggctcgagacccagggagggcatcagggcact
ggaagggggtggtggggccatggcaggatgggcttgatgtacctgaactgtgtcttaagg
aaggaagcttcaggtaagttgagaacattctgaaaaggagtatcggggtgagcgaagact
ccgaggtggagctcacgtggcctgtgcagggacctgatggatgggcagtcgggaaggaat
ggcagccagacggtgggatggatactagagtttctgctttagctgacctctggtgggctt
tcttcagtctccgctggagatgagggacaagcaacagctattaggctgagaagagactgg
ggggggggcgttgaatctaccaagaacctgtatcagaacgttgactgtaacataacccct
tggaggtacaGGAAGGAGGGAGCTGTTACA
Primer
(+)GGGCCAGGAGATAGTATGGG
(+)TGTAACAGCTCCCTCCTTCC


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