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Mouse element [ mm1354 ]


Position: chr2:33,697,059-33,701,118 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: A630071L07Rik - Pbx3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTCACACAAAGCCACTGGTTaacctgaatgtctcccccaagtcagatgagctaatagtct
gtgggcacagggaagaaccaggacccttaccagggagcaggcagcatggaactcagaggc
agagctgaacttaaaatgcagcagcttagtgaaaccatgcccgatgtaaagtgggcacgc
tgccttccccaggggtcacaggagatgctacagatgcaaggcacctgcaaagatgactct
gcttctagactaaatgtgaggatgctgtggaaccaggcatttaacactgtgccacactat
cactcatgagtcctaacttgtcccacagcggttacttgtgatctctggtcccaagattcc
tgcatcatctctgggactcaatctgtcccttcaaaagtgaatcttctcctaccatcgacc
aggaccaggaggtgccactctgtgtcaagtactgtgcctgacacaaagaggctcagtgga
tgctcactaaaggaatgggtgagcaaggcgaccacccagccagagctgtaagaagccatg
cctcgtgcaacttccctaagcagcattgctcccaggactgaagccagcaagctaagcagg
aggctcaccctccatcccttcccagctcaccactctccaaggcacatgctgccttctact
gaggccactgccctgggcactgaccccaaggctgctgccgagcgcctctagtgctgaagg
aggctgacttgtcctggtagcccaggcttggagtcagctggtgcccaggtaacaccagtt
ccttcagttgtacccagtgtctgccctgtcacaagatgggactgccaagaagagactcat
cagatatctgtgacactgccttacaagggggaaaagtacatgaaacataaaacaggcaac
tcaagaaagaaattgtgtcatcaaactactgagatacagcagcagagggaaaaccaaacc
aaaccaaaccaaaccagctcagcctggaagagcaaggttcagttatctaaactgggaagt
ctggaaagacatctttcctcataagcctttgtcaggctttcataatttgctttgttttgt
atttttaggtttttgctttaagacagggcctcactttgtggcccaggctgactttaaact
catatgtatgtatgtatgtatgtatgtatgtagctaactaacttatttacatctcaaatg
ctgccccccatcctggtctctcctttcagagttcctcctcccatcctgactttaaattct
tgatgatcctcctgcctcagcttcctgagtgctagtgtgagccagcagcttttactcttt
aagatagggtctctctatagccctagttggcctgaaactcactatgtaggccacagtggc
ctcagattcacagagatctgcctgcttctgcctcctgagcactgggattgaaaggcatgc
gccaccaccaaactctgcatgcatatgttggtttgttaaaaggcacattctaattggaag
aagcagagagttgtgatacaagagtcactggcccttctagcggcccatgatctcatgcct
tgctagatggtatcaacacatttcccaactgatgattatgtctggtggcacatgctactg
attccagccttctccactgccagcatccacctttgggtgcccagtgttggagctgcagaa
cccagggagccctgagagggagtaggtaacagggacagcagtgttatttggacctcatag
gcccagcctcccatttcctcctttggctgtcacagaaaataagtgattatcagagagctc
ccagcagccctttgagcagtgtcccagctgcctgcagctagctgatatgcctagataaga
aggaccaaagccaagtgggatgctctcccctggctagggctaggcatagggcagcagcct
gctgacagtccactgtttgtcaggcactggtctaagcaagtcacctaccgcttttcactg
aagggtcctgacagtcaaatgacatggggagcccccccaccccaccaaacccacaccagc
ttagataactgaacctgaagacagcagcaaacttactccagtcattcagtatgctcaaaa
acccagaccccctaggcccactgctgggaaaatgccttcaggacttttgacacacctcag
gcaggcttatctggaacacagaagggcccaagcagacagggagaggcacattaaagactg
cccagctatcactgtgctgagggaaagctgggagggccggctaagtgttgaaggctatag
atacagggacacttgaggcacattttgaggcatggcagtgcttgggctttgctttgatgg
cagaggtgtgaaactgtactatggttcagtgtctcctccaaagcccagactggagtgtgg
ctgccactgagctgtgaggctgaagaggtggggcctaagagggtgcctaggccaaacggg
tgcagcccttggagagggactcatgatgttactctgggtaggttgttgtggcaggggtgt
tcatctcatacatttcctctgcacttccacactctgtgacatctgctacactaatccaac
acaaggaagccgtcatgggaaatagctcctctatcttgggcttcccagactcaagacccc
agagtcaaatgacttccatcgttcataaacgtccagtttgtggacgctatagcacaatac
agactacagcagctgaaaacagaccgagacatagcaacacaaatcttcatgccaaaccat
ttccttattttgtaagacctgaatcatcggggtgctgaatggcttaaaagatctctacgt
ccaggtgtgacccagggtgtcctcaggcttttcagaagcccagagaggtgaatgccaggg
agataatggaaagatcaagctcactgaaacgattctgaactctgccctagggagagaaag
cacattcgtccatccgaggcctggatgtccttttccctcactcagttgcttctcaccaca
catttcttctccctaactcctcagtgtaagtcatccatggccccacagtgcacacggcaa
agctctgaggagatgaagctgctgtctgagttacagatgaggaaacccaagcacacatgc
agaacggtcacaggatgacatatgcccagggctgtgtccaggatatgtcagagggaaaag
tgcttataagagagcacataagagaatatgtgcagagagctttcataaggccatagaaaa
ggcaaacactctagtccacaggcaggctgcacacatcaaccagcaatggtacagagcctc
gcaaagggtgagcaacccctggccttggctagttatggatctcagaggggctctgcctaa
caatcaatgcaaagaggtcctaagaacagacaaaaccatcactgctgtgtgacaagaggg
aaaaccagagcccactgagagaggcctctgagggtagaggcacttgctgtcaaacctgac
aacctgcgtttgagacccacttggtatatggagagagctgactcccacaagttgtcctcg
gacctacacacacacacacacacacacacactctcactctctctctctctctctctctct
cacacacacacacacacacacacacacactctctctctctctctctctcacactcacaca
cacacactcacactctcacacacacacacactctctctctctctctcactcactcactca
aggagtttagagggagagggagagggagagggggaggggggaggggtgctccacagtgag
gtgactttggtaccaaagcctgagaacacacaatgtcccaggtgctaggagttctgcttg
caggcagactctgagaacatggtgagttgtcccttgtcccttcactgaggatgcctggct
tctgagggctgctgagggagaagggtcccacagaccacatgaggcacattcatcacaggg
aaggacacatgataaacacataaatgaacaggagttaatgcaatgcctgacagtacgttt
ttagaaggataactgacagcAACTTGGAGAGAACGGGGAG
Primer
(+)CTCACACAAAGCCACTGGTT
(+)CTCCCCGTTCTCTCCAAGTT


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