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Mouse element [ mm1353 ]


Position: chr6:145,403,686-145,408,106 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ifltd1 - Tuba3b

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACAGAGCAGATCCTTGGCTTtgccttcaagcccagcctcctggattcctgaattgcattt
ccatccaagcctggatgctctggtgttgaccctccctaaggtcttagcagtggtacaagg
agacttgaagctgtgcccacacaaagagtaatgtgtattttaaggagtcttgaagccaag
atattgcaggcgtcatcggtggtgttgagagtgcagaactccctcatctgcctgtttggt
ttctcttcacttgcgccagaggctcctccacagccatgcagcaggtcccccttgcccctc
ggggagctagcaatcctgtgaacgctggtgcctgcactcaatcaagagccatttggtcaa
gatctccaagggttcagcctgggttttggagctgttaactgctctcctagtgcctctaat
aggcaggcttggttgaaatcaatcaaaatgtccttcttgggcaaattcctacagtcattg
tcacatatacagtcccagagggccaagcagaaagtgttgcagacagcttgtaaagtgtgg
taacaatagtctgaagaggtaaacctaagacagaacctgaaagagctgactctgagtgac
aggagttaagtatgtgcacacttgctgtaggaagctgtcacccaggggcagtggtcacac
cggtggctgggggacatcgtgcatgttaacctgtgggccggatgctgttccttctagtaa
cagccaaactgtctactttccatgagatctcacatgcttccagtctgctctgcggatacc
tgccttctgaggtcggctcatgtcagctaaatgctcggtttgtgtagcaagcactttaga
accaagggacagatgtcattgaaggcagaggagctcagagttctgctaaatgtgcccatt
tccctgcatggctcatgaaaaatgaatgagcagtatatctgtgcccaacagagcctccac
ttgaattattgaagtgaatattaatagcaatgggaagaagcaatgctcagccagccagct
cctgtgtaagtggcttaacctctttgggcctcagtttccccctggtgtaggttatgggca
tggagtaaagcagagctgagttcaagtctggccaaatgaaggttacctgttagaattcat
cttctgggtcactgcttgggtttgtcctggagaaatatctgttagaattcatcttccggg
tcactgcttaggtatgtcctgggggcttatctgttagtgttcatcccgatcactgtttcg
gtatgtcctggagaattatctattagaattcatcttccaggtcattgcttaggtatgtcc
tggaggattacatgttagtattcgtcttccaggtcactgcttagataagtactggaaaat
tacctgttagtatccgtctaccgggtcactgcttaggtgtgtcctgggggccctctgctg
agagctctgacttgatgtggcatcagttccattttttcccattcctgattcatggattta
ctgcatacaagttgttgccatttcacattgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgcctgtggtctctctcccctactaaggtaaactttgtgaggagagggactgtgct
aggcataggctagaggtacctaatgtatggttcacagcacttaagaaataatatttgctg
agggaactgtcaggtggctcagtgggtaaaggcgtttgccacaaagcctgaattcagtcc
ttagagcccacagagtagaagaagagggtgtagtcctgaaagttgttttctgacctcccc
gtgttctctgagatacaagtgagcacaggcacgcatgcgaacgtacacatacagagagag
agagagagagagagagagagagagaataaataaatgttttcaagtttctgatttgttgaa
tcaacaaataattgattacattccatatgttgttaacttgaggtgcttcgtgttaaaaat
catttgaaataaaatttaccttatgtttaaagtccaccctagtaacttcagtttttaaaa
actcctattgttgtaaaatattttcctaaccatgtcactagcattaagaaatagcttctt
ttctatctctaacttacagacagcggaatctctgggcactctcgttcaagtgcatgcttt
gagcaagactcttggcctcccagctgggctgagggagcacagaatcctcgttttctaaca
gcagaaaagcacgtgacgttctcctctgaccttgtccaggatcttctcagccattgttgg
cttagagtctggaactgaagggcgctttcagtgactcccgaaagtaacagctgacggaac
tcacaagctccgctctgtcctatttatacacccaggtgttgcgctcacgggtttgacaga
atcacaccaccgaccgtggtcagcacactgtccccagtgaccttgggcaccctgtctgcc
ctgatggcacatacccatatctggtgagcgaggcttattctgagacctaagtcactcgtt
ttcagttgcaccccctccctctgccgttgtcaacttgagcaccccataagatctggcctg
aggaacgcagctggagactgcgaggtgttctgctctcggctgggcacctgctatctgcct
ttccagcttgcagatagccattgctgggttatcaagcccccattgtgcaagccagtccag
taaattctctcctgtaattggctctcttcctctggagaactctgcataagacagtggact
ctgcttgagtctcgcctcctaatcctcacgttgaattacaaatcctcagttcctcagaac
atgacaacagacgtggggtcttcacagcggtgatcaactctaagatgaagtcgtcggtgt
ggaccttaacaccgtatgactgatgtccttgtggaagaggagaggagggcacaggcagac
actaggaaggaccaggtattcctgtcaaggacatgagcctgggagaaactacccctgccc
atgtcttggtcttgaagcctccagggaattaactgttgtttcgcctcctggcctgtggtg
ctgcagtagggaagccttttcaaatctaaaactgcttttcatatctacaggctcctttcc
cagtgtgctccctgggcactgcagtctgctggggctgtaagttcccaggacacatgcatg
tcacccatgcaggaatttctctagcttcgtcttccctctcaactgttcactcctcgggtg
tctggagaaacatggcttttatggatgtccctccatcttctgctgtcctccctctacctc
ctatgtgaacatgtgatcacatcgctgacccagaggatccaaaatcaccccatttcaaga
tctttaatccctattcaaatcctctttgacagataagtcagtattaacagaatctgtgga
ttaggccatatatatatagagagagatatatagatatgatattctctatatactatatga
tgtatggtacattagaaaatagaagttattatagctcttgtctcccttttctgtttcctg
tgtgtagataggtcctttaatgtctaattcattagctaagaagaaccatttcagagttcc
tgtgtatgtcagacactgccacagacaggtgtgcagcaaacacattggactgaagtaaca
tagaagacaggagagttcctatagcctgactggttcttcaaagacttcccagacatggac
ttgcttgagataggttataaatagtttgctaggcaggtatcacattgaaaggattctgga
agaagggagcaaaggttttccaaatcccacagaatgaaattcataatacagaccaacaat
tatgggagattactcagcacctctaacaaaagagggagtggggaggagggagggaggaaa
gggaggagggagggagaaagtatgtctgtctctgtgtctgtgtgtctttgtctctgtgcc
tctgcatctctgtgtgtatgtgtctgtatcagtgtgtatgtgtgcatctgtgtccatata
tgtttgtgtgtgtctgtgtctgtctgtgtgtctgcatctgtgtctgtgtgtatgcatctg
catatgtctgggttgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagggacctcagagttcttatcagaatcct
caaacctggttaatttaagaaaaggataaaattagattcaagctccttattcatgtttta
acaaaaagcttttcagtcactccaaaaacttctaatttgttatctccgagtcagaagctt
cagtggtgttcttaactctgtagtgaggaacaaggagagaagatctgcatcagtgaacac
acagaaagcctgagtagacacAATTGTGTCAGGGTCCCAGT
Primer
(+)ACAGAGCAGATCCTTGGCTT
(+)actgggaccctgacacAATT


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