Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1346 ]


Position: chr21:34,465,959-34,469,066 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: OLIG1 - LOC101928107

Timepoints:
e11.5

Midbrain staining is restricted to forebrain/midbrain boundary region.

Expression Pattern
forebrain (8 out of 8 embryos) 
midbrain (mesencephalon) (7 out of 8 embryos) 

Embryo 1

Embryo 2

Embryo 3

Embryo 4

Embryo 5

Embryo 7

Fasta sequence
TGGAAATGATAATGCCTGGActccctttgctcacattcagaatctcctttgcaaaggcca
gacccaggctcacggctgatgccgccaaaggtgttcagtagaccctggcatggataccgg
ggcaggttcctggctggcgacggggtgcccctgggtaaagctcccctccagagggtgccc
ccatgaccagggctttgctggaagcagccttctgatgagacgctaccagattagacagac
acttcctgattagacactgtattttacctggaacctaactgattggacggtcatacttat
tatcttagtttcttcttttaaaaaatgataataagaatatttagtgacatagaaaaatgt
ttatttacatggtgaaggaagcagattaagaaaatgtacactcctaattatatataatat
atataatgataaattaatgtgtttcttagttctgacaaatgtattgtagttaggtaagct
gttaacaatagggaaaactgggtgaggagtataggggagctctctgaactatttttgcaa
catttctgtaaacttaaaattattccaaaataaaaggtttattttaaaataagggaactt
attcactgtagggcacacatttctcagggcctcaattatttaacatttaatttaataaaa
cactttggaaatccaaaaaaattacgtatgtatttttatctgtattacaagtctattcac
atgtaagttatagaagaaagctattctagaaaatacaccaaaacaggccgggcacggtgg
ctcacactagtaatcccagcactttgggaagccgaggcaggcggatcacctgaggttggg
agtttgagaccagcctgaccaatatggagaaaccctgtctctactaaaaatacaaaacta
gccgggcgtggtggcgcattgcctaatcccagctacttgggaggctgaggcaggagaatt
gcttgaaccagggaggcggaggttgcagtgagccgagatcgcaccattgcactccagcct
gggcaacaagagcgaaactccgtctaaaaaaaaagaaaagaaaagaaaatacaccaaaat
aataacaacagctatatctgtgggatttagaatgatttttattttttctttagtttttcc
aaacttttaagattttcctataagaaaactcttctataattattacctatataattctgt
agtatatacattatattatataatatataaaaataaaattacttttatgagattgctttt
aaaatcagaaaaaatttaaaatagccacgtggattttccaagagtcccaccagcagctgt
gaggctgagagtgtgtaaagccgggcaaagctattggcaggaggaggcagctatgcacgg
gctctgggtatcgttcacactggaggtactatatgtgcttaatatggactaggcatgagc
agctaatagtgcttttagaaccacaaagtcaaattgataatgatagcattcctaatttag
cacaatgaaaagcctggtaactattgcccgagctaatgaatgggtaagagaaagaaaagc
ttcttttcttttgtaaagcttaacattaaaattagctgcatctgttacctttggtgcaaa
aagcaaagacggaagaaaccctgttccagttggtattttgcctctgagatctttatgcct
gagctcttcaagtcgcagataacagtgaaggccctaagactcaccatccaaaacagtttt
ggaaaaaaaccaaagaagagaaaataatttcaaaccttaaagcaatgcatggtgattctc
tggggggtctaagaatttctcccagagaaatgataaggcagacaaatggaagatcaatga
agcaacatcgtggcaataatgcaattggtcctgccgtagtcatgaacatgtaaataacaa
gacagcaataagaagaccccagactctgcctagaaacaaaatattcagcctgttgttgtt
gtttcttattgcaggattttgagtggaaaagtagttccacttgtcaatcagctacgttgc
aggggctaatagattctggtgtttagggaggtcaacacggaatttaatttaacatctcac
aatacacccacatgcccagaaaatgtggacagcttgatagggttcactgagccaaagaag
caagacccaaacagtgcattaatgtataggggaagaatagttgcaatcagccccttgtga
attggacagagggcttggagatgaagcaattatcagccatcggggattaatagtaaagtg
tgaataccaagctgtatatgttaggggcagaatatgttgcctatagaaaacaacaaagga
cgtttcttactattaagtgagattaaacgtaatggcctgatttaatcacaaaggcagaat
taaattcagatggcaacttcaaagtggacacaggaacacaggccactgcttacatttaca
tatagctggcatagcttggcctgcaacacaataggataaagtttctttggccacttaaac
aattttctattcttcacctttttctttttttctttttttttcttttgtgggtgtgtgtgt
gtgtgtgtgtgtgaacactcactgtatttattccccaattgcatttagttagtaagaagg
agctaagtgttatatttattcatggaggctataactgttaattcttccaaattgtgaaaa
aaaagcctcatagggtcaataagaacagagtagttataatcagattgtcaccaaaaaaga
aaaagaagaaaagcaattaaacaaaacaaacaaacaaaactttctagagtgaacagtgtc
ttctaactttctctcccttcaacttaagaattcagctcttgaggtctaaacttcgctccc
gggaaaggcagctttccccctcctcgggtggagatttatgccaccatcatggagcccagc
cgagctgtttttcaatacaagccagttcctctttccttctttgttaatgaaggcttgttt
ccttctttgctccccaccgaaaaggcagttctcctaagaggtttgggggatagaagcctg
ttgcagggtttagaggggttgaggcactTACTGAGAGTGGGTCCCCAG
Primer
(+)tggaaatgataatgcctgga
(+)ctggggacccactctcagta


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.